View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_high_20 (Length: 297)
Name: NF9388_high_20
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 2003900 - 2003631
Alignment:
| Q |
18 |
gaatctaacctctcatcccacaaattatatgtgattctagtaggacatcctcaagatccatgtgctatcttatgtgttgacccctacatagtggatactc |
117 |
Q |
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| T |
2003900 |
gaatctaacctctcatgccacaaattatatgtgattcgagtaggacatccccaagatccatgtgctatcttatgtgttgactcctacatagtggatactt |
2003801 |
T |
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| Q |
118 |
aacagtgatcttagattcctcagtacatgtatcatgattaattaagctgtaattttatatcatctcaaacacatgtaaaatatcccactgtgccaccatt |
217 |
Q |
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| T |
2003800 |
aacaatgatcttagattcctcagtacatgtatcatgattaattaagctgtaattttatatcatctcaaacacatataaaatatcccactgtgccaccatt |
2003701 |
T |
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| Q |
218 |
gtaaatttgatcttcaacttgcaacannnnnnnnaatatcaaattaatatatccttttttctctctctct |
287 |
Q |
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| T |
2003700 |
gtaaatttgatcttcaacttgcaacattttttttaatatcaaattaatatatccttttttttctctctct |
2003631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 42 - 178
Target Start/End: Complemental strand, 2009891 - 2009747
Alignment:
| Q |
42 |
ttatatgtgattctagtaggacatcctcaagatccatgtgctatcttatgtgttgacccctacatagtggatactca---------acagtgatcttaga |
132 |
Q |
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| T |
2009891 |
ttatatgtgattcgagtaggacatcccaaagatccatgtgctatcttatgtgttgacccc-ggataatggatacttacttaacagtgcagtgatcttaga |
2009793 |
T |
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| Q |
133 |
ttcctcagtacatgtatcatgattaattaagctgtaattttatatc |
178 |
Q |
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| T |
2009792 |
ttccttagtacatgtatcttgattaattaaggtgtaattttatatc |
2009747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 276
Target Start/End: Complemental strand, 2009751 - 2009672
Alignment:
| Q |
197 |
atatcccactgtgccaccattgtaaatttgatcttcaacttgcaacannnnnnnnaatatcaaattaatatatccttttt |
276 |
Q |
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| T |
2009751 |
atatcccatcgtgccaccattgtaattttgatcttcaacttgtaacctttgttttaatatcaaattaatatatctttttt |
2009672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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