View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388_high_28 (Length: 255)

Name: NF9388_high_28
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388_high_28
NF9388_high_28
[»] chr1 (16 HSPs)
chr1 (84-237)||(49623081-49623229)
chr1 (4-81)||(42886646-42886728)
chr1 (1-51)||(46833179-46833229)
chr1 (1-54)||(49622963-49623016)
chr1 (1-59)||(11376619-11376677)
chr1 (1-59)||(21374007-21374065)
chr1 (1-59)||(29743408-29743466)
chr1 (2-59)||(44565005-44565062)
chr1 (1-52)||(15544441-15544492)
chr1 (1-59)||(2326901-2326959)
chr1 (1-59)||(51621914-51621972)
chr1 (84-160)||(49602734-49602810)
chr1 (41-81)||(11376582-11376622)
chr1 (41-81)||(21374062-21374102)
chr1 (37-81)||(25700306-25700350)
chr1 (41-81)||(44564968-44565008)
[»] chr4 (13 HSPs)
chr4 (1-78)||(54975749-54975826)
chr4 (1-81)||(6885149-6885234)
chr4 (1-52)||(38024657-38024708)
chr4 (1-59)||(49284201-49284259)
chr4 (2-59)||(42739714-42739771)
chr4 (4-59)||(1921145-1921200)
chr4 (4-59)||(22443867-22443922)
chr4 (1-50)||(29118913-29118962)
chr4 (41-81)||(22443919-22443959)
chr4 (41-81)||(42739768-42739808)
chr4 (1-59)||(30548051-30548109)
chr4 (47-81)||(38024718-38024752)
chr4 (10-43)||(55873512-55873545)
[»] chr8 (8 HSPs)
chr8 (4-83)||(22976388-22976467)
chr8 (1-59)||(6610905-6610963)
chr8 (1-59)||(2955918-2955976)
chr8 (1-59)||(43047901-43047959)
chr8 (4-59)||(40977542-40977597)
chr8 (41-81)||(36557047-36557087)
chr8 (41-81)||(40977505-40977545)
chr8 (41-81)||(2955881-2955921)
[»] chr2 (10 HSPs)
chr2 (1-81)||(7759437-7759522)
chr2 (4-81)||(34210483-34210560)
chr2 (1-59)||(35734648-35734706)
chr2 (1-55)||(28808682-28808736)
chr2 (1-59)||(10355624-10355682)
chr2 (1-59)||(16254926-16254984)
chr2 (1-59)||(43589942-43590000)
chr2 (1-52)||(16256139-16256190)
chr2 (42-81)||(16256095-16256134)
chr2 (41-81)||(10355587-10355627)
[»] scaffold0470 (1 HSPs)
scaffold0470 (1-59)||(193-251)
[»] chr7 (8 HSPs)
chr7 (1-59)||(12314010-12314068)
chr7 (1-50)||(29008755-29008804)
chr7 (4-59)||(1827889-1827944)
chr7 (1-52)||(40461287-40461338)
chr7 (5-55)||(33118636-33118686)
chr7 (3-81)||(44119178-44119256)
chr7 (5-59)||(47645423-47645477)
chr7 (41-81)||(1827852-1827892)
[»] chr5 (11 HSPs)
chr5 (1-59)||(1751295-1751353)
chr5 (1-59)||(11726704-11726762)
chr5 (1-51)||(30411527-30411577)
chr5 (1-59)||(10329836-10329894)
chr5 (2-44)||(35384171-35384213)
chr5 (1-59)||(37275944-37276002)
chr5 (41-81)||(1751258-1751298)
chr5 (41-80)||(35384115-35384154)
chr5 (41-79)||(25595631-25595669)
chr5 (1-59)||(37275339-37275397)
chr5 (41-81)||(11726759-11726799)
[»] chr6 (2 HSPs)
chr6 (1-59)||(11455106-11455164)
chr6 (1-62)||(18227319-18227380)
[»] chr3 (2 HSPs)
chr3 (1-59)||(46485617-46485675)
chr3 (41-81)||(46485672-46485712)
[»] scaffold0155 (2 HSPs)
scaffold0155 (1-57)||(27987-28043)
scaffold0155 (41-81)||(27943-27983)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 84 - 237
Target Start/End: Original strand, 49623081 - 49623229
Alignment:
Q  84 atggttggatgagtccatttgtttcaagatcacacctttcaaacttgaaacaataatatattgaacccccgccatactacagtactactaccatctataa 183  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||     ||||||||||||||||||    
T  49623081 atggttggatgagtccatttgtttcaagagcacacctttcaaacttgaaacaataatatattgaaaccccgccatac-----tactactaccatctataa 49623175  T
Q  184 tgtttcaaacattctcctatcacggcgtaaatatcacatatactctacccaact 237  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  49623176 tgtttcaagcattctcctatcacggcgtaaatatcacatatactctacccaact 49623229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 42886728 - 42886646
Alignment:
Q  4 ccatcatttgaagcaaatatatatttaattgatatatctcccctt-----ccctcccctccattaaaaccactcccctcccct 81  Q
    |||||||||||| |||| |||||||||||||||||||||||||||     |||| ||||||||||||||| ||||||||||||    
T  42886728 ccatcatttgaaccaaacatatatttaattgatatatctccccttcccttcccttccctccattaaaacccctcccctcccct 42886646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 46833229 - 46833179
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccc 51  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46833229 ctcccatcatttgaaccaaatatatatttaattgatatatctccccttccc 46833179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 49622963 - 49623016
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcc 54  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  49622963 ctcccatcatttgaaccaaacatatatttaattgatatatctccccttccctcc 49623016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11376677 - 11376619
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| || ||||||||||    
T  11376677 ctcccatcatttgaaccaaacatatatttaattgatatatctcccttttcctcccctcc 11376619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 21374007 - 21374065
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  21374007 ctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 21374065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29743466 - 29743408
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||    
T  29743466 ctcccatcatttgaaccaaacatatatttaattgatatatctccccttccattccctcc 29743408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 44565062 - 44565005
Alignment:
Q  2 tcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    |||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||    
T  44565062 tcccatcatttgaaccaaacatgtatttaattgatatatctccccttcccttccctcc 44565005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 15544492 - 15544441
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 52  Q
    ||||||||||||||| |||| || ||||||||||||||||||||||||||||    
T  15544492 ctcccatcatttgaaccaaacatgtatttaattgatatatctccccttccct 15544441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2326901 - 2326959
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||||| | ||||||    
T  2326901 ctcccatcatttgaaccaaacatatatataattgatatatctccccttccattccctcc 2326959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 51621914 - 51621972
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| |||||| ||||||||||||||| |||||||| ||||||    
T  51621914 ctcccatcatttgaaccaaacatatatctaattgatatatctctccttcccttccctcc 51621972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 49602734 - 49602810
Alignment:
Q  84 atggttggatgagtccatttgtttcaagatcacacctttcaaacttgaaacaataatatattgaacccccgccatac 160  Q
    ||||||||||||||||||||||||||| | ||   |||||||||| ||||| | | |||||||||||||| ||||||    
T  49602734 atggttggatgagtccatttgtttcaatagcaacactttcaaactggaaactagactatattgaacccccaccatac 49602810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 11376622 - 11376582
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  11376622 ctccctttccctcccctccattaaaacccctcccctcccct 11376582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 21374062 - 21374102
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  21374062 ctccctttccctcccctccattaaaacccctcccctcccct 21374102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 25700306 - 25700350
Alignment:
Q  37 atatctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||||||||| ||||||||||| |||||| | ||||||||||||    
T  25700306 atatctcccctcccctcccctccgttaaaatccctcccctcccct 25700350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 44565008 - 44564968
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||| || ||||||||||||||||||| ||||||||||||    
T  44565008 ctcccttttcctcccctccattaaaacccctcccctcccct 44564968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 54975826 - 54975749
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaaaaccactcccctcc 78  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  54975826 ctcccatcatttgaaccaaatatatatttaattgatatatctccccttcccttccctccattaaaacccctcccctcc 54975749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 6885149 - 6885234
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctc-----cccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||||||||||||| |||||||||||||||||||||||||||     | ||||||||||||||||||||||| ||| ||||||||    
T  6885149 ctcccatcatttgaaccaaatatatatttaattgatatatctctccttctcttccctcccctccattaaaacccctctcctcccct 6885234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38024657 - 38024708
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 52  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  38024657 ctcccatcatttgaaccaaacatatatttaattgatatatctccccttccct 38024708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 49284201 - 49284259
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  49284201 ctcccatcatttgaaccaaacatatatttaattgaaatatctcccattcccttccctcc 49284259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 42739714 - 42739771
Alignment:
Q  2 tcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    |||||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||||    
T  42739714 tcccatcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccctcc 42739771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 1921200 - 1921145
Alignment:
Q  4 ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    |||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  1921200 ccatcatttgaaccaaacatatatttaattgaaatatctccctttcccttccctcc 1921145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 22443867 - 22443922
Alignment:
Q  4 ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    |||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  22443867 ccatcatttgaaccaaacatatatttaattgaaatatctccctttcccttccctcc 22443922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29118962 - 29118913
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttcc 50  Q
    ||||||||||||||| |||  |||||||||||||| ||||||||||||||    
T  29118962 ctcccatcatttgaaccaatcatatatttaattgaaatatctccccttcc 29118913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 22443919 - 22443959
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  22443919 ctccctttccctcccctccattaaaacccctcccctcccct 22443959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 42739768 - 42739808
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  42739768 ctccctttccctcccctccattaaaacccctcccctcccct 42739808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 30548109 - 30548051
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||| || |||||| |||| | |||||||||| | |||||||||||||||||||||||    
T  30548109 ctcccctcttttgaaccaaacacatatttaattaaaatatctccccttccctcccctcc 30548051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 38024718 - 38024752
Alignment:
Q  47 ttccctcccctccattaaaaccactcccctcccct 81  Q
    |||||||||||||||||||||| ||||||||||||    
T  38024718 ttccctcccctccattaaaacccctcccctcccct 38024752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 55873545 - 55873512
Alignment:
Q  10 tttgaagcaaatatatatttaattgatatatctc 43  Q
    |||||| |||||||||||||||||||||||||||    
T  55873545 tttgaaccaaatatatatttaattgatatatctc 55873512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 22976467 - 22976388
Alignment:
Q  4 ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaaaaccactcccctcccctag 83  Q
    |||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||    
T  22976467 ccatcatttgaaccaaacatatatttaattgaaatatctccctttccctcccctccattaaaacccctcccctcccctag 22976388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 6610905 - 6610963
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||    
T  6610905 ctcccatcatttgaaccaaacatatatttaattgatatatctccctttcccttccctcc 6610963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2955976 - 2955918
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||||    
T  2955976 ctcccatcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccctcc 2955918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 43047959 - 43047901
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    |||| |||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  43047959 ctcctatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 43047901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 40977597 - 40977542
Alignment:
Q  4 ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    |||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  40977597 ccatcatttgaaccaaacatatatttaattgaaatatctccctttcccttccctcc 40977542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 36557087 - 36557047
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  36557087 ctccctttccctcccctccattaaaacccctcccctcccct 36557047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 40977545 - 40977505
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  40977545 ctccctttccctcccctccattaaaacccctcccctcccct 40977505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 2955921 - 2955881
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||| |||||||||||||| ||||||| ||||||||||||    
T  2955921 ctccctttccctcccctccactaaaacccctcccctcccct 2955881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 7759437 - 7759522
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctcccc-----ttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||     |||||||||||||||||||||| ||||||||||||    
T  7759437 ctcccatcatttgaaccaaacatatatttaattgatatatctccccttcctttccctcccctccattaaaacccctcccctcccct 7759522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 34210483 - 34210560
Alignment:
Q  4 ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    |||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||||    
T  34210483 ccatcatttgaaccaaacatatatttaattgaaatatctccctttccctcccctccattaaaactcctcccctcccct 34210560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 35734648 - 35734706
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  35734648 ctcccatcatttgaaccaaacatatatttaattgatatatctccccttccctcccctcc 35734706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28808736 - 28808682
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctccc 55  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  28808736 ctcccatcatttgaaccaaacatatatttaattgatatatctccccttccctccc 28808682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10355682 - 10355624
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||    
T  10355682 ctcccatcatttgaaccaaacatatatttaattgatatatttccccttcccttccctcc 10355624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16254984 - 16254926
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  16254984 ctcccattatttgaaccaaacatatatttaattgatatatcttcccttccctcccctcc 16254926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 43589942 - 43590000
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| |||||||||||| | |||||||||||||||| ||||||    
T  43589942 ctcccatcatttgaaccaaacatatatttaattaaaatatctccccttcccttccctcc 43590000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16256190 - 16256139
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 52  Q
    ||||||||||||||| |||| |||||||||||||| |||||| |||||||||    
T  16256190 ctcccatcatttgaaccaaacatatatttaattgaaatatcttcccttccct 16256139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 16256134 - 16256095
Alignment:
Q  42 tccccttccctcccctccattaaaaccactcccctcccct 81  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  16256134 tccctttccctcccctccattaaaacccctcccctcccct 16256095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 10355627 - 10355587
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||| |||||||||||||||||||||| ||||| ||||||    
T  10355627 ctccctttccctcccctccattaaaacccctcccttcccct 10355587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 193 - 251
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||    
T  193 ctcccatcatttgaaccaaacatatatttaattgatatatctccctttcccttccctcc 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 12314010 - 12314068
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  12314010 ctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 12314068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 29008755 - 29008804
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttcc 50  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  29008755 ctcccatcatttgaatcaaacatatatttaattgatatatctccccttcc 29008804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 1827944 - 1827889
Alignment:
Q  4 ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  1827944 ccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 1827889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40461287 - 40461338
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 52  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||||||||||    
T  40461287 ctcccatcatttgaaccaaacatatatttaattgaaatatctccccttccct 40461338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 33118686 - 33118636
Alignment:
Q  5 catcatttgaagcaaatatatatttaattgatatatctccccttccctccc 55  Q
    ||||||||||| |||| |||||||||||||| |||||||||||||||||||    
T  33118686 catcatttgaaccaaacatatatttaattgaaatatctccccttccctccc 33118636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 44119178 - 44119256
Alignment:
Q  3 cccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||||||||||| |||| |||||||||||||| |||| |  |||||||| |||||||||||| |  ||||||||||||    
T  44119178 cccatcatttgaaccaaacatatatttaattgaaatatttttccttcccttccctccattaaacctcctcccctcccct 44119256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 47645477 - 47645423
Alignment:
Q  5 catcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||||    
T  47645477 catcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccctcc 47645423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 1827892 - 1827852
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||| ||||| |||||||||||||||| ||||||||||||    
T  1827892 ctccctttcccccccctccattaaaacccctcccctcccct 1827852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 1751353 - 1751295
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  1751353 ctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 1751295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11726704 - 11726762
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  11726704 ctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 11726762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30411527 - 30411577
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccc 51  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  30411527 ctcccatcatttgaaccaaacatatatttaattgatatatctccccttccc 30411577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10329836 - 10329894
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| |||||||||||||| |||||||||||||| | ||||||    
T  10329836 ctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcctttccctcc 10329894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 35384213 - 35384171
Alignment:
Q  2 tcccatcatttgaagcaaatatatatttaattgatatatctcc 44  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  35384213 tcccatcatttgaaccaaacatatatttaattgatatatctcc 35384171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 37276002 - 37275944
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    |||||| |||||||| |||| |||||||||||||| |||||||||||||| | ||||||    
T  37276002 ctcccaccatttgaaccaaacatatatttaattgaaatatctccccttcctttccctcc 37275944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 1751298 - 1751258
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  1751298 ctccctttccctcccctccattaaaacccctcccctcccct 1751258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 35384154 - 35384115
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctcccc 80  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  35384154 ctccctttccctcccctccattaaaacccctcccctcccc 35384115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 25595631 - 25595669
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctccc 79  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  25595631 ctccctttccctcccctccattaaaacccctcccctccc 25595669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37275339 - 37275397
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    |||||| |||||||| |||| |||||||||||||| ||||||||| |||| | ||||||    
T  37275339 ctcccaccatttgaaccaaacatatatttaattgaaatatctcccattcctttccctcc 37275397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 11726759 - 11726799
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||| |||||||| ||||||||||||| ||||||||||||    
T  11726759 ctccctttccctcctctccattaaaacccctcccctcccct 11726799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11455164 - 11455106
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    |||| |||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  11455164 ctcctatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 11455106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18227380 - 18227319
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccatt 62  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||| ||| || |||||||||    
T  18227380 ctcccatcatttgaaccaaacatatatttaattgatatacctcccattctcttccctccatt 18227319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 46485617 - 46485675
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 59  Q
    ||||||||||||||| |||| |||||||||||| | |||||||||||||||| ||||||    
T  46485617 ctcccatcatttgaaccaaacatatatttaattaaaatatctccccttcccttccctcc 46485675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 46485672 - 46485712
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  46485672 ctccctttccctcccctccattaaaacccctcccctcccct 46485712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 28043 - 27987
Alignment:
Q  1 ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccct 57  Q
    ||||||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||    
T  28043 ctcccatcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccct 27987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 27983 - 27943
Alignment:
Q  41 ctccccttccctcccctccattaaaaccactcccctcccct 81  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  27983 ctccctttccctcccctccattaaaacccctcccctcccct 27943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University