View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_high_30 (Length: 250)
Name: NF9388_high_30
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 32064565 - 32064799
Alignment:
| Q |
1 |
tagtttggttttggagcctaaaggtttgggtttatattataagagtaaaaattctcctaggccaagtaaatattggttttcatcttcttggttttcattt |
100 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32064565 |
tagtttggttttggaacctaaaggtttggctttatattataggagtacaaattctcctaggccaagtaaatattggttttcttcttcttggttttcattt |
32064664 |
T |
|
| Q |
101 |
gaaaaaggctcattagaaaatgtcacactaaaatctgatccagaatcttttgagtttggatttgatttttctgttaccaattctaccacttctggcaata |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32064665 |
gaaaaaggctcattagaaaatgtcacacttaaatctgatccagaatcttttgagtttggatttgattttcatgttaccaattctaccacttctggcaata |
32064764 |
T |
|
| Q |
201 |
gtatcattggtaggccagtgaataatagtacctta |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
32064765 |
gtatcattggtaggccagtgaataatagtacctta |
32064799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 32031430 - 32031664
Alignment:
| Q |
1 |
tagtttggttttggagcctaaaggtttgggtttatattataagagtaaaaattctcctaggccaagtaaatattggttttcatcttcttggttttcattt |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32031430 |
tagtttggttttggagcctaaaggtttggctttatattataagagtacaaattctcctaggccaattaaatattggttttcatcttcttggttttcattt |
32031529 |
T |
|
| Q |
101 |
gaaaaaggctcattagaaaatgtcacactaaaatctgatccagaatcttttgagtttggatttgatttttctgttaccaattctaccacttctggcaata |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| | || |
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| T |
32031530 |
gaaaaaggttcattagaaaatgtcacactaaaatctgatccagaatcttttgagtatggatttgatttttttgttgccaattctaccacttctggtagta |
32031629 |
T |
|
| Q |
201 |
gtatcattggtaggccagtgaataatagtacctta |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
32031630 |
gtatcattggtaggccagtgaataatagtacctta |
32031664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 32071897 - 32072127
Alignment:
| Q |
1 |
tagtttggttttggagcctaaaggtttgggtttatattataagagtaaaaattctcctaggccaagtaaatattggttttcatcttcttggttttcattt |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| |||||||||||| ||| ||| |||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
32071897 |
tagtttgattttggagcctaaaggtttggctttgtattataagagtgaaatttcacctatgccaattaaatattggttttcatcttcttggttttcattt |
32071996 |
T |
|
| Q |
101 |
gaaaaaggctcattagaaaatgtcacactaaaatctgatccagaatcttttgagtttggatttgatttttctgttaccaattctaccacttctggcaata |
200 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| | || |
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| T |
32071997 |
gaaaaaggctcattagaaaatgtcacacttaaatctgatccagaatcttttgagtttggatttgatttttttgttgccaattctaccacttctggtagta |
32072096 |
T |
|
| Q |
201 |
gtatcattggtaggccagtgaataatagtac |
231 |
Q |
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|||||||||||||||||||||| |||||||| |
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| T |
32072097 |
gtatcattggtaggccagtgaagaatagtac |
32072127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 32078422 - 32078524
Alignment:
| Q |
1 |
tagtttggttttggagcctaaaggtttgggtttatattataagagtaaaaattctcctaggccaagtaaatattggttttcatcttcttggttttcattt |
100 |
Q |
| |
|
|||||||||||| || |||||||| ||| ||||||||| |||||||||||||| |||||||||| | |||||| ||||||| ||||| ||||||| |
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| T |
32078422 |
tagtttggttttcgatcctaaagggttgactttatattacaagagtaaaaattcacctaggccaattccctattggaattcatctaattggtattcattt |
32078521 |
T |
|
| Q |
101 |
gaa |
103 |
Q |
| |
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||| |
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|
| T |
32078522 |
gaa |
32078524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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