View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_high_32 (Length: 246)
Name: NF9388_high_32
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 13080708 - 13080499
Alignment:
| Q |
16 |
tactactttaaatttgcactacattattaacaacgcacnnnnnnnnnnnnnnnctagtcaataa-tgtaagtacaataaaattagtaaaggaaatttata |
114 |
Q |
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| T |
13080708 |
tactactttaaatttgcactacattattaacaacgcacaaaaaaaaaaa----ctagtcaataaatgtaagttcaataaaattagtaaaggaaatttata |
13080613 |
T |
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| Q |
115 |
ctaccagcgctnnnnnnnnnttaataaaattataagagtattagttgaatcaaaagtataataagtttgaggcctaaaaatatttgaattttgtcatttt |
214 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13080612 |
ctaccagcactaaaaaaaa-ttaataaaattataagagtattagttgaatcaaaagtataataagtttgaggcctaaaaatatttgaattttgtcatttt |
13080514 |
T |
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| Q |
215 |
gatgatgttgaatct |
229 |
Q |
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||||||||||||||| |
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| T |
13080513 |
gatgatgttgaatct |
13080499 |
T |
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