View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_high_40 (Length: 224)
Name: NF9388_high_40
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 54572307 - 54572499
Alignment:
| Q |
16 |
gtgttctattcgtatatgtgcttgtgcttcataggtagttaattcactttttaagagtaaataattgcaattaagtgagtaagagccttatatactttgg |
115 |
Q |
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| T |
54572307 |
gtgttctattcttatatgtgcttgtgcttcataggtagttaattcactttttaagagtaaataattgcaattaagtgagtaagagccttatatactttgg |
54572406 |
T |
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| Q |
116 |
gatagaatttcattgcaaaatgcatagggtctccatgaatcattggttaggactgacaaatctatatcattgattttcattcctccatgaatc |
208 |
Q |
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| T |
54572407 |
gatagaatttcattgcaaaatgcatagggtctccatgaatcattggttaggactgacaaatctatatcattgattttcattcctccatgaatc |
54572499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 55155574 - 55155766
Alignment:
| Q |
16 |
gtgttctattcgtatatgtgcttgtgcttcataggtagttaattcactttttaagagtaaataattgcaattaagtgagtaagagccttatatactttgg |
115 |
Q |
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| T |
55155574 |
gtgttctattcttatatgtgcttgtgcttcataggtagttaattcactttttaagagtaaataattgcaattaagtgagtaagagccttatatactttgg |
55155673 |
T |
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| Q |
116 |
gatagaatttcattgcaaaatgcatagggtctccatgaatcattggttaggactgacaaatctatatcattgattttcattcctccatgaatc |
208 |
Q |
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| T |
55155674 |
gatagaatttcattgcaaaatgcatagggtctccatgaatcattggttaggactgacaaatctatatcattgattttcattcctccatgaatc |
55155766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 4097269 - 4097316
Alignment:
| Q |
153 |
aatcattggttaggactgacaaatctatatcattgattttcattcctc |
200 |
Q |
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| T |
4097269 |
aatcattgattaggactgagaaatctaaatcattgattttgattcctc |
4097316 |
T |
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