View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388_low_1 (Length: 721)

Name: NF9388_low_1
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388_low_1
NF9388_low_1
[»] chr4 (3 HSPs)
chr4 (21-702)||(43536020-43536700)
chr4 (593-639)||(43536779-43536825)
chr4 (531-586)||(400628-400683)
[»] chr5 (3 HSPs)
chr5 (531-592)||(16704005-16704066)
chr5 (532-586)||(13358368-13358422)
chr5 (532-586)||(18333528-18333582)
[»] chr7 (2 HSPs)
chr7 (531-582)||(44343714-44343765)
chr7 (532-586)||(35308209-35308263)
[»] chr6 (1 HSPs)
chr6 (529-592)||(8567015-8567078)
[»] scaffold0766 (1 HSPs)
scaffold0766 (532-586)||(6241-6295)
[»] chr3 (1 HSPs)
chr3 (552-586)||(13741165-13741199)
[»] chr1 (1 HSPs)
chr1 (532-585)||(32952038-32952091)


Alignment Details
Target: chr4 (Bit Score: 638; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 21 - 702
Target Start/End: Original strand, 43536020 - 43536700
Alignment:
Q  21 caagggaaaacaaaccccaacaaggtcacttcaaagaaaaagaatacactcatcaggagaagaaaataaatactccaaagacctagcaataaataatatt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43536020 caagggaaaacaaaccccaacaaggtcacttcaaagaaaaagaatacactcatcaggagaagaaaataaatactccaaagacctagcaataaataatatt 43536119  T
Q  121 gatccttccaacctagacaatatgtgaccctataaccttctctataatgctgaaatatgtgagcaatcaggtctctttgaatcaaatgatgaatactttg 220  Q
     || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43536120 -attcttccaacctagacaatatgtgatcctataaccttctctataatgctgaaatatgtgagcaatcaggtctctttgaatcaaatgatgaatactttg 43536218  T
Q  221 aagaatggaccatataggtgggaaggagggcaactctttggaataagattgaattacaacgacctagagtcactctcaagcgacaaatatttgtattttt 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43536219 aagaatggaccatataggtgggaaggagggcaactctttggaataagattgaattacaacgacctagagtcactctcaagccacaaatatttgtattttt 43536318  T
Q  321 tcttttatgcaagcttcaaatcatggcaaatgccctaactccgccattaaaatagaagagagagtcaatatcatgctttagtattgtaaaagattgtcat 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43536319 tcttttatgcaagcttcaaatcatggcaaatgccctaactccgccattaaaatagaagagagggtcaatatcatgctttagtattgtaaaagattgtcat 43536418  T
Q  421 ttaacaaatacgaaatattgtaaaagattaacacatacatcaaatcatgcattattaatatctaaacatttgtgaaaatattttgcttggtatatttgtg 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  43536419 ttaacaaatacgaaatattgtaaaagattaacacatacatcaaatcatgcattattaatatctaaacatttgtgaaaatattttgtttggtaaatttgtg 43536518  T
Q  521 aaaatttgtattgttaagaatctcacgtaagataggagatagtttgacaatgtgtttataagtgggacaatcttatccgatgtgagactctttaacggtt 620  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43536519 aaaatttgtattgttaagaatctcacggaagataggagatagtttgacaatgtgtttataagtgggacaatcttattcgatgtgagactctttaacggtt 43536618  T
Q  621 gttaacactcttcttctaacaatgtgcttataagtgggggcggacaatccccacctcacaaaccgtttttgtgtggttgtac 702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43536619 gttaacactcttcttctaacaatgtgcttataagtgggggcggacaatccccacctcacaagccgtttttgtgtggttgtac 43536700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 593 - 639
Target Start/End: Original strand, 43536779 - 43536825
Alignment:
Q  593 ttatccgatgtgagactctttaacggttgttaacactcttcttctaa 639  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  43536779 ttatccgatgtgagactctttaacggttgttagcactcttcttctaa 43536825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 586
Target Start/End: Complemental strand, 400683 - 400628
Alignment:
Q  531 ttgttaagaatctcacgtaagataggagatagtttgacaatgtgtttataagtggg 586  Q
    ||||||||| |||||| | ||||| ||||| || ||||||||||||||||||||||    
T  400683 ttgttaagagtctcacatcagatatgagatggtctgacaatgtgtttataagtggg 400628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 531 - 592
Target Start/End: Complemental strand, 16704066 - 16704005
Alignment:
Q  531 ttgttaagaatctcacgtaagataggagatagtttgacaatgtgtttataagtgggacaatc 592  Q
    ||||||||| |||||| | ||||||||||| |||| |||||||||||||||||| |||||||    
T  16704066 ttgttaagagtctcacattagataggagatggtttaacaatgtgtttataagtgagacaatc 16704005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 532 - 586
Target Start/End: Original strand, 13358368 - 13358422
Alignment:
Q  532 tgttaagaatctcacgtaagataggagatagtttgacaatgtgtttataagtggg 586  Q
    |||||||| |||||| | ||||||||||| |  ||||||||||||||||||||||    
T  13358368 tgttaagagtctcacatcagataggagattggctgacaatgtgtttataagtggg 13358422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 532 - 586
Target Start/End: Complemental strand, 18333582 - 18333528
Alignment:
Q  532 tgttaagaatctcacgtaagataggagatagtttgacaatgtgtttataagtggg 586  Q
    ||||||||||| ||| |  |||||||||| || ||||||||||||||||||||||    
T  18333582 tgttaagaatcccacatcggataggagatggtctgacaatgtgtttataagtggg 18333528  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 582
Target Start/End: Complemental strand, 44343765 - 44343714
Alignment:
Q  531 ttgttaagaatctcacgtaagataggagatagtttgacaatgtgtttataag 582  Q
    ||||||||| |||||| | ||||| |||||||||||||||||||| ||||||    
T  44343765 ttgttaagagtctcacatcagataagagatagtttgacaatgtgtctataag 44343714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 532 - 586
Target Start/End: Complemental strand, 35308263 - 35308209
Alignment:
Q  532 tgttaagaatctcacgtaagataggagatagtttgacaatgtgtttataagtggg 586  Q
    ||||||||||||||| | |||||||||||    ||||||||||||||||||||||    
T  35308263 tgttaagaatctcacatcagataggagatgtcatgacaatgtgtttataagtggg 35308209  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 592
Target Start/End: Complemental strand, 8567078 - 8567015
Alignment:
Q  529 tattgttaagaatctcacgtaagataggagatagtttgacaatgtgtttataagtgggacaatc 592  Q
    ||||||||||| || ||| |  |||||| ||| || ||||||||||||||||||||||||||||    
T  8567078 tattgttaagagtcccacctcggataggtgatggtctgacaatgtgtttataagtgggacaatc 8567015  T

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Target: scaffold0766 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 532 - 586
Target Start/End: Original strand, 6241 - 6295
Alignment:
Q  532 tgttaagaatctcacgtaagataggagatagtttgacaatgtgtttataagtggg 586  Q
    |||||||| || ||| | ||||| |||||||| ||||||||||||||||||||||    
T  6241 tgttaagagtcccacatcagataagagatagtctgacaatgtgtttataagtggg 6295  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 552 - 586
Target Start/End: Complemental strand, 13741199 - 13741165
Alignment:
Q  552 ataggagatagtttgacaatgtgtttataagtggg 586  Q
    ||||||||| |||||||||||||||||||||||||    
T  13741199 ataggagatggtttgacaatgtgtttataagtggg 13741165  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 585
Target Start/End: Original strand, 32952038 - 32952091
Alignment:
Q  532 tgttaagaatctcacgtaagataggagatagtttgacaatgtgtttataagtgg 585  Q
    ||||||||||| ||| |  |||||||| | ||||||||||||||||||||||||    
T  32952038 tgttaagaatcccacattggataggagttggtttgacaatgtgtttataagtgg 32952091  T

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