View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_10 (Length: 483)
Name: NF9388_low_10
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 8031448 - 8030980
Alignment:
| Q |
1 |
taacacaaatagtttagaatcaagaagtaattatgcaaacacacaacaacaaca---taaatcaaagatatgcaagcagcttctaggtcacacttttttg |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8031448 |
taacacaaatagtttagaatcaagaagtaattatgcaaacacacaacaacaacaacataaatcaaagatatgcaagcagcttctaggtcacacttttttg |
8031349 |
T |
|
| Q |
98 |
gtcaatgatatgctcacattaatgaattcagttctctccttagacatgcgatcaactaaaatttctagatatcttccaaaaacttcttcaatgatagttt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8031348 |
gtcaatgatatgctcacattaatgaattcagttctctccttagacatgcgatcaactaaaatttctagatatcttccaaaaacttcttcaatgatagttt |
8031249 |
T |
|
| Q |
198 |
ctccaaagtgactgaccaataaaggttcagctacagccctcatacattttgtgacattgtatgccccatcaatgagtgatttagataaactacttctaaa |
297 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8031248 |
ctccaaagtgactgaccaataaaggttcagctacggccctcatacattttgtgacattgtatgccccatcaatgagtgatttagataaactacttctaaa |
8031149 |
T |
|
| Q |
298 |
atcaatctcattccaatcattataagcattccaatgtacttctgttacttccagacgatcaatagtgaatgacccttctctcaaaacctctaattttact |
397 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8031148 |
atcaacctcattccaatcattataagcattccaatgtacttctgttacttccagacgatcaatagtgaatgacccttctctcaaaacctctaattttact |
8031049 |
T |
|
| Q |
398 |
tctgatggagatggtgtgtactgaggaatgttgaaagtgtccatttgctcctccattataattccctac |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8031048 |
tctgatggagatggtgtgtactgaggaatgttgaaagtgtccatttgctcctccattataattccctac |
8030980 |
T |
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