View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_101 (Length: 229)
Name: NF9388_low_101
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_101 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 2535104 - 2535299
Alignment:
| Q |
16 |
tgttgttgctctgttatgcctttcccgtcgtgtttgaatctttgaggaagtataacttatacttcaatcgttttctgttaacattgctatttagaaaact |
115 |
Q |
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| T |
2535104 |
tgttgttgctctgttatgcctttcccgtcgtgtttgaatatttgaggaagtataacttatacttcaatccttttctgttaacattgctatttagaaaact |
2535203 |
T |
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| Q |
116 |
taattgtttttctcaaagaaaacttaattgtttacatgaactttgaacaacattcatatctcatacaacccggaaattgaacaagacagaaaagca |
211 |
Q |
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| T |
2535204 |
taattgtttttctcaaagaaaacttaattgtttacatgaactttgaacaacattcatatctcatacaacccagaaattgaacaagacagaaaagca |
2535299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 85 - 211
Target Start/End: Complemental strand, 11447075 - 11446949
Alignment:
| Q |
85 |
gttttctgttaacattgctatttagaaaacttaattgtttttctcaaagaaaacttaattgtttacatgaactttgaacaacattcatatctcatacaac |
184 |
Q |
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| T |
11447075 |
gttttctgttaacattgctatttagaaaacttaattgttttgctcaaagaaaacttaattgtttacatgaactttgaacaacattcatatctcatacaac |
11446976 |
T |
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| Q |
185 |
ccggaaattgaacaagacagaaaagca |
211 |
Q |
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| T |
11446975 |
ccagaaattgaacaagacagaaaagca |
11446949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 47563702 - 47563618
Alignment:
| Q |
24 |
ctctgttatgcctttcccgtcgtgtttgaatctttgagg-aagtataacttatacttcaatcgttttctgt--taacattgctat |
105 |
Q |
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| T |
47563702 |
ctctgttatgccttttccgtcacgtttgaatctttgaggaaagtataacttatacttcaatcgtttgctgtaataacattgctat |
47563618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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