View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_107 (Length: 227)
Name: NF9388_low_107
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_107 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 5107200 - 5106974
Alignment:
| Q |
1 |
gtgatatgtcacatatgcaaaatggtggtgaggactgtgatgatcattttgaggttagctttgaattgggatctgagttggaaattgaagtgttgagaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5107200 |
gtgatatgtcacatatgcaaaatggtggtgaggactgtgatgatcattttgaggttagctttgaattgggatctgagttggaaattgaagtgttgagaag |
5107101 |
T |
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| Q |
101 |
aatttcaaacactcttgctgccaatgattgcttagatatatgcattgacatttatgttaaggtaacatccttttgattatctatgatcatgttgcaaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5107100 |
aatttcaaacactcttgctgccaatgattgcttagatatatgcattgacatctatgttaaggtaacatccttttgattatctatgatcatgttgcaaata |
5107001 |
T |
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| Q |
201 |
ttatttgatttctctttagattagcag |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5107000 |
ttatttgatttctctttagattagcag |
5106974 |
T |
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