View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_111 (Length: 222)
Name: NF9388_low_111
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_111 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32031098 - 32031319
Alignment:
| Q |
1 |
tcggagcagcttttccggtgggtatgggaagcaaatagaggcaacccagttggtgaaaatggtactttttcattaggtgctgatggaaatcttgtgttgg |
100 |
Q |
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| T |
32031098 |
tcggagcagcttttccggtgggtatgggaagcaaatagaggcaatccagttggtgaaaatggtactttttcattaggtgctgatggaaatcttgtgttgg |
32031197 |
T |
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| Q |
101 |
ctaatgctgatggaagaattgtttggcaaacaaacacttccaataaaggtgttgttgcctttaggttactctcaaatggtaacatggttttaattgatgc |
200 |
Q |
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| T |
32031198 |
ctaatgctgatggaagaattgtttggcaaacaaacacttccaataaaggtgttgttgcctttaggttactctcaaatggtaacatggttttaattgatgc |
32031297 |
T |
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| Q |
201 |
caaaggtaaatttgtttggcaa |
222 |
Q |
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| T |
32031298 |
caaaggtaaatttgtttggcaa |
32031319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32064233 - 32064454
Alignment:
| Q |
1 |
tcggagcagcttttccggtgggtatgggaagcaaatagaggcaacccagttggtgaaaatggtactttttcattaggtgctgatggaaatcttgtgttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32064233 |
tcggagcagcttttccggtgggtatgggaagcaaatagaggcaacccagttggtgaaaatggtactttttcattaggtgctgatggaaatcttgtgttgg |
32064332 |
T |
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| Q |
101 |
ctaatgctgatggaagaattgtttggcaaacaaacacttccaataaaggtgttgttgcctttaggttactctcaaatggtaacatggttttaattgatgc |
200 |
Q |
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| T |
32064333 |
ctaatgctgatggaagaattgtttggcaaacaaacacttccaataaaggtgttgttgcatttaggttactctcaaatggtaacatggttttaattgatgc |
32064432 |
T |
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| Q |
201 |
caaaggtaaatttgtttggcaa |
222 |
Q |
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| T |
32064433 |
caaagataaatttgtttggcaa |
32064454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 32071581 - 32071781
Alignment:
| Q |
16 |
cggtgggtatgggaagcaaatagaggcaacccagttggtgaaaatggtactttttcattaggtgctgatggaaatcttgtgttggctaatgctgatggaa |
115 |
Q |
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| T |
32071581 |
cggtgggtttgggaagcaaatagaggcaacccagttgatgaaaatgcaactttttcattaggtgttgatggaaatcttgtgtgggctaatgatgatggaa |
32071680 |
T |
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| Q |
116 |
gaattgtttggcaaacaaacacttccaataaaggtgttgttgcctttaggttactctcaaatggtaacatggttttaattgatgccaaaggtaaatttgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| ||| ||||| |
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| T |
32071681 |
gaattgtttggcaaacaaacacttccaataaaggtgttgttgccttaaggttactctcaaatggtaacatggttttaattgatactaaagttaattttgt |
32071780 |
T |
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| Q |
216 |
t |
216 |
Q |
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| T |
32071781 |
t |
32071781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32078089 - 32078311
Alignment:
| Q |
1 |
tcggagcagcttttccggtgggtatgggaagcaaatagaggcaacccagttggtgaaaatggtactttttcattaggtgctgatggaaatcttgtgttgg |
100 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||| | ||||| |||||||||||||| |
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| T |
32078089 |
tcggagcagcttttctggtgggtgtgggaagcaaatagaggcagcccagttgatgaaaatgcaactttttcattagaagttgatgaaaatcttgtgttgg |
32078188 |
T |
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| Q |
101 |
ctaatgctgatggaagaattgtttggcaaacaaacacttccaataaaggtgttgttgcctttaggttactctcaaatggtaacatggttttaattgatgc |
200 |
Q |
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| T |
32078189 |
ctaatgctgatggaagaattatttggcaaacaaacacttccaat-aaggtgttattgcctttaggttactctcaaatagtaacatggttttaattgatac |
32078287 |
T |
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| Q |
201 |
--caaaggtaaatttgtttggcaa |
222 |
Q |
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||||||||||||||||||||| |
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| T |
32078288 |
tataaaggtaaatttgtttggcaa |
32078311 |
T |
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