View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_112 (Length: 218)
Name: NF9388_low_112
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_112 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 32724465 - 32724253
Alignment:
| Q |
1 |
ttcacttttttcaattaacctatgtttc-gttagatgacttttgtcccttcaattagaaattgacaatgtaaaccatcaatgttgaaggtgtatcaccaa |
99 |
Q |
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| T |
32724465 |
ttcacttttttcaattaacttatgtttccgttagatgacttttgtcccttcaattagaaattggcaatgtaaaccatcaatgttgaaggtgtatcaccaa |
32724366 |
T |
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| Q |
100 |
caaataatagttaaagtgaaaattctttattgaaagaaaacagaaggaagttaatatagggaaccaaaatttatactcatgaatctctatcccctctttg |
199 |
Q |
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| T |
32724365 |
caaataatagtgaaagtgaaaattctttattgaaagaaaccagaagaaagttaatatagggaaccaaaatttatactcatgaatctctatcccctctctg |
32724266 |
T |
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| Q |
200 |
atatctctctata |
212 |
Q |
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||||||||||||| |
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| T |
32724265 |
atatctctctata |
32724253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 4001789 - 4001641
Alignment:
| Q |
49 |
tcaattagaaattgacaa-tgtaaaccatcaatgttgaaggtgtatcaccaacaaataatagttaaagtgaaaattcttta---------ttgaaagaaa |
138 |
Q |
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||||||||||| |||||| |||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| | |||||||||| |
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| T |
4001789 |
tcaattagaaactgacaaatgtaaaccatcaatattgaaggtgtataaccaacaaataatagtaaaagtgaaaattcttaaataaaaaagttgaaagaaa |
4001690 |
T |
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| Q |
139 |
acagaaggaagttaatatagggaaccaaaatttatactcatgaatctct |
187 |
Q |
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|||||||| ||||| |||| |||| |||||||||| |||||||||||| |
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| T |
4001689 |
ccagaaggatgttaacatagagaactaaaatttatagtcatgaatctct |
4001641 |
T |
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