View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_15 (Length: 453)
Name: NF9388_low_15
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 4386666 - 4387081
Alignment:
| Q |
17 |
cataggtcaggtaatgtaactttatatcaaacctcaacaacacttcactttctaccaatctctagttaggactttacatcttataacatgctttacactt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4386666 |
cataggtcaggtaatgtaactttatatcaaacctcaacaacacttcactttccaccactctctagttaggactttacatcttataacatgatttacactt |
4386765 |
T |
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| Q |
117 |
ggtagtaatctaaacttgaccaatttaagtttggtttaggccacataagtatgattatgtttggctggtgataaggatgaagaaaagctaagaatatatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4386766 |
ggtagtaatctaaacttgaccaatttaagtttggttaaggccacataagtatgattatgtttgg----tgataaggatgaagaaaagctaagaatatatc |
4386861 |
T |
|
| Q |
217 |
acatggaaatggtgatatgccaagtggatcaaatttaaaacaaagatataaaaataattcaccaatatatatataattaagtttgctaagacatatagct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4386862 |
acatggaaatggtgatatgccaagtggatcaaatttaaaacaaagatataaaaataattcaccaatatatatataattaactttgctaagacatatagct |
4386961 |
T |
|
| Q |
317 |
gtgattcagtagagagcatca-nnnnnnnnngggtatggtttggcttatatattcgtctttttaaaaggaaactcacatgtgtgtgcagccaagaatcat |
415 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4386962 |
gtgattcagtagagagcatcattttttttttgggtatggtttggcttatatattcgtctttttaaaaggaaactcacatgtgtgtgcagccaagaatcat |
4387061 |
T |
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| Q |
416 |
ggggacatggttatgtgtat |
435 |
Q |
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|||||||||||||||||||| |
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| T |
4387062 |
ggggacatggttatgtgtat |
4387081 |
T |
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