View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388_low_16 (Length: 452)

Name: NF9388_low_16
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388_low_16
NF9388_low_16
[»] chr5 (1 HSPs)
chr5 (171-236)||(8837501-8837565)
[»] chr4 (6 HSPs)
chr4 (181-380)||(45088717-45088913)
chr4 (184-230)||(44642825-44642871)
chr4 (399-449)||(44668633-44668683)
chr4 (399-449)||(44687909-44687959)
chr4 (23-56)||(45094985-45095018)
chr4 (420-449)||(45095432-45095461)
[»] chr8 (3 HSPs)
chr8 (195-238)||(42694632-42694675)
chr8 (18-64)||(42694841-42694887)
chr8 (197-238)||(42700277-42700318)
[»] chr1 (7 HSPs)
chr1 (416-449)||(43986172-43986205)
chr1 (418-449)||(43983365-43983396)
chr1 (402-449)||(44004750-44004797)
chr1 (411-449)||(19567332-19567370)
chr1 (121-170)||(43908814-43908863)
chr1 (130-170)||(43902482-43902522)
chr1 (171-235)||(43908726-43908789)
[»] chr7 (2 HSPs)
chr7 (17-65)||(9798398-9798446)
chr7 (416-449)||(41688793-41688826)
[»] chr2 (1 HSPs)
chr2 (403-448)||(24002368-24002413)


Alignment Details
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 8837501 - 8837565
Alignment:
Q  171 atgttactgaaaaataacaatacaagatatggtttaccattgcggcgataccagactctcatggta 236  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||||||||| |||||||||||||||    
T  8837501 atgttactgaaaaataacaatacaa-atatgatttagcattgcggcgatagcagactctcatggta 8837565  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 380
Target Start/End: Original strand, 45088717 - 45088913
Alignment:
Q  181 aaaataacaatacaagatatggtttaccattgcggcgataccagactctcatggtaaacaagtggatcacgcccaaatgcgccaaaaatcttactgcaat 280  Q
    ||||||||||||||| ||||| ||||||||||||| |||||||||||||| || |||| | || |||||  | |||||  ||||||| || |||| | ||    
T  45088717 aaaataacaatacaatatatgatttaccattgcggtgataccagactctcgtgataaatatgtagatcaaacgcaaatttgccaaaattcgtactacgat 45088816  T
Q  281 agtccagtccaccatcatcattcaaattatacacaataagttcggaattattcttgtttctcagcagaaggacaccgttttctgaaatgaacaaggcatc 380  Q
    | | ||  | ||||| ||  || || |||||||||| ||||| |||   |  ||||  |||||||||||| ||||||||||| |||||||||||||||||    
T  45088817 aatgcaaactaccattattttttaagttatacacaacaagtttgga---aagcttgggtctcagcagaagaacaccgttttcagaaatgaacaaggcatc 45088913  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 44642825 - 44642871
Alignment:
Q  184 ataacaatacaagatatggtttaccattgcggcgataccagactctc 230  Q
    ||||||||| || ||||| ||||||||||||| ||||||||||||||    
T  44642825 ataacaatagaatatatgatttaccattgcggtgataccagactctc 44642871  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 449
Target Start/End: Original strand, 44668633 - 44668683
Alignment:
Q  399 atcctgagggaagattgtcaatttagtccatgactcaacaactccatactc 449  Q
    |||||| |||| |||  ||| ||||||||||||||||||||||||||||||    
T  44668633 atcctgtgggatgatcatcagtttagtccatgactcaacaactccatactc 44668683  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 449
Target Start/End: Original strand, 44687909 - 44687959
Alignment:
Q  399 atcctgagggaagattgtcaatttagtccatgactcaacaactccatactc 449  Q
    |||||| |||| |||  ||| ||||||||||||||||||||||||||||||    
T  44687909 atcctgtgggatgatcatcagtttagtccatgactcaacaactccatactc 44687959  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 45094985 - 45095018
Alignment:
Q  23 acagacaaattactcttgcaagtgtaaatgcaaa 56  Q
    |||||||||||||||||||||||||| |||||||    
T  45094985 acagacaaattactcttgcaagtgtagatgcaaa 45095018  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 449
Target Start/End: Original strand, 45095432 - 45095461
Alignment:
Q  420 tttagtccatgactcaacaactccatactc 449  Q
    ||||||||||||||||||||||||||||||    
T  45095432 tttagtccatgactcaacaactccatactc 45095461  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 42694675 - 42694632
Alignment:
Q  195 agatatggtttaccattgcggcgataccagactctcatggtaaa 238  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||    
T  42694675 agatatgatttaccattgcggtgataccagactctcatggtaaa 42694632  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 42694887 - 42694841
Alignment:
Q  18 catagacagacaaattactcttgcaagtgtaaatgcaaatagtgagt 64  Q
    ||||||||||||||| ||||||||||||||| ||| |||| ||||||    
T  42694887 catagacagacaaataactcttgcaagtgtagatgaaaattgtgagt 42694841  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 42700318 - 42700277
Alignment:
Q  197 atatggtttaccattgcggcgataccagactctcatggtaaa 238  Q
    ||||| |||||||||||||||||| |||||||||||| ||||    
T  42700318 atatgatttaccattgcggcgatagcagactctcatgctaaa 42700277  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 449
Target Start/End: Original strand, 43986172 - 43986205
Alignment:
Q  416 tcaatttagtccatgactcaacaactccatactc 449  Q
    ||||||||||||||||||||||||||||||||||    
T  43986172 tcaatttagtccatgactcaacaactccatactc 43986205  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 449
Target Start/End: Original strand, 43983365 - 43983396
Alignment:
Q  418 aatttagtccatgactcaacaactccatactc 449  Q
    ||||||||||||||||||||||||||||||||    
T  43983365 aatttagtccatgactcaacaactccatactc 43983396  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 449
Target Start/End: Original strand, 44004750 - 44004797
Alignment:
Q  402 ctgagggaagattgtcaatttagtccatgactcaacaactccatactc 449  Q
    |||||||| |||  |||||||||||||||||||| |||||||||||||    
T  44004750 ctgagggatgatcatcaatttagtccatgactcagcaactccatactc 44004797  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 449
Target Start/End: Original strand, 19567332 - 19567370
Alignment:
Q  411 gattgtcaatttagtccatgactcaacaactccatactc 449  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  19567332 gattgtcaatatagtccatgactcagcaactccatactc 19567370  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 43908863 - 43908814
Alignment:
Q  121 ttctgaataaaatggaataaaaagaagatgacaacaaacattaattgaat 170  Q
    |||| ||||||||  |||||||| ||||| ||||||||||||||||||||    
T  43908863 ttctaaataaaataaaataaaaataagatcacaacaaacattaattgaat 43908814  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 43902522 - 43902482
Alignment:
Q  130 aaatggaataaaaagaagatgacaacaaacattaattgaat 170  Q
    |||| ||||||||| ||||| ||||||||||||||||||||    
T  43902522 aaatagaataaaaacaagatcacaacaaacattaattgaat 43902482  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 43908789 - 43908726
Alignment:
Q  171 atgttactgaaaaataacaatacaagatatggtttaccattgcggcgataccagactctcatggt 235  Q
    |||||| ||||||| ||||||| |||||||| ||||||| ||| | ||||| |||||||||||||    
T  43908789 atgttagtgaaaaa-aacaatataagatatgatttaccactgctgtgatactagactctcatggt 43908726  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 9798398 - 9798446
Alignment:
Q  17 acatagacagacaaattactcttgcaagtgtaaatgcaaatagtgagtg 65  Q
    |||| ||||||||||||| ||||||||||||| ||| ||||||||||||    
T  9798398 acatggacagacaaattaatcttgcaagtgtagatgaaaatagtgagtg 9798446  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 449
Target Start/End: Original strand, 41688793 - 41688826
Alignment:
Q  416 tcaatttagtccatgactcaacaactccatactc 449  Q
    ||||||||||||||||||||||||||| ||||||    
T  41688793 tcaatttagtccatgactcaacaactctatactc 41688826  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 448
Target Start/End: Complemental strand, 24002413 - 24002368
Alignment:
Q  403 tgagggaagattgtcaatttagtccatgactcaacaactccatact 448  Q
    ||||||| |||| ||||||| |||||||||||||||||||| ||||    
T  24002413 tgagggatgattttcaattttgtccatgactcaacaactccgtact 24002368  T

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