View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388_low_21 (Length: 437)

Name: NF9388_low_21
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388_low_21
NF9388_low_21
[»] scaffold0094 (1 HSPs)
scaffold0094 (92-287)||(42395-42590)
[»] chr7 (2 HSPs)
chr7 (297-420)||(23996447-23996570)
chr7 (10-89)||(23996365-23996444)
[»] chr4 (6 HSPs)
chr4 (92-245)||(45354875-45355028)
chr4 (92-245)||(45368616-45368769)
chr4 (92-250)||(45353210-45353362)
chr4 (92-250)||(45362689-45362841)
chr4 (92-145)||(45354782-45354835)
chr4 (92-145)||(45368523-45368576)
[»] chr6 (3 HSPs)
chr6 (297-420)||(19744677-19744800)
chr6 (28-69)||(19744612-19744653)
chr6 (253-299)||(4014358-4014404)
[»] chr2 (2 HSPs)
chr2 (340-416)||(1092646-1092721)
chr2 (28-73)||(1092555-1092600)


Alignment Details
Target: scaffold0094 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 92 - 287
Target Start/End: Original strand, 42395 - 42590
Alignment:
Q  92 cgtaacacagtatataagactcgtgattcaggcaatccaatcttccgtgtgtaaggcggaagccccccaaaattgttttccaaaaatgggtgatcaaaag 191  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  42395 cgtagcacaatatataagactcgtgattcagacaatccaatcttccgtgtgtaaggcggaagcccccgaaaattgttttccaaaaatgggtgatcataag 42494  T
Q  192 atcgaatcactatgcgtatcttggtggtcattactttataatttctttttggcttactcctcttcctgttctattgatcagaagcatccagcagcg 287  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||    
T  42495 atcgaatcactatgcgtatcttgttggtcattactttataatttctttttggcttactcttcttcctgttctattgataagaagcatccaacagcg 42590  T

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Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 297 - 420
Target Start/End: Original strand, 23996447 - 23996570
Alignment:
Q  297 ggaaggggataatcttcagtaatggcctacaaatagtactgcactaatttggtttctactaatatttttgtacaagtaattgcttactaaatttccgtgt 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23996447 ggaaggggataatcttcagtaatggcctacaaatagtactgcactaatttggtttctactaatatttttgtacaagtaattgcttactaaatttccgtgt 23996546  T
Q  397 ttgcaatcatttgatactaattgt 420  Q
    ||||||| ||||||||||||||||    
T  23996547 ttgcaattatttgatactaattgt 23996570  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 23996365 - 23996444
Alignment:
Q  10 attatactgtactgcagaaacttggacaaagaatgaagaatagcaattgtggaagaacaatgattgacgataaatgaaaa 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23996365 attatactgtactgcagaaacttggacaaagaatgaagaatagcaattgtggaagaacaatgattgacgataaatgaaaa 23996444  T

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Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 45354875 - 45355028
Alignment:
Q  92 cgtaacacagtatataagactcgtgattcaggcaatccaatcttccgtgtgtaaggcggaagccccccaaaattgttttccaaaaatgggtgatcaaaag 191  Q
    ||||||||| |||||||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  45354875 cgtaacacaatatataagactcatgattcaggaaacccaatcttccgcgtgtaaggcggaagccccccaaaatagttatccaaaaatgggtgatcaaaag 45354974  T
Q  192 atcgaatcactatgcgtatcttggtggtcattactttataatttctttttggct 245  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45354975 atcaaatcactatgtgtatcttggtggtcattactttataatttctttttggct 45355028  T

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Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 45368616 - 45368769
Alignment:
Q  92 cgtaacacagtatataagactcgtgattcaggcaatccaatcttccgtgtgtaaggcggaagccccccaaaattgttttccaaaaatgggtgatcaaaag 191  Q
    ||||||||| |||||||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  45368616 cgtaacacaatatataagactcatgattcaggaaacccaatcttccgcgtgtaaggcggaagccccccaaaatagttatccaaaaatgggtgatcaaaag 45368715  T
Q  192 atcgaatcactatgcgtatcttggtggtcattactttataatttctttttggct 245  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45368716 atcaaatcactatgtgtatcttggtggtcattactttataatttctttttggct 45368769  T

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Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 92 - 250
Target Start/End: Original strand, 45353210 - 45353362
Alignment:
Q  92 cgtaacacagtatataagactcgtgattcaggcaatccaatcttccgtgtgtaaggcggaagccccccaaaattgttttccaaaaatgggtgatcaaaag 191  Q
    ||||||||| ||||||||||||||||||      |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||    
T  45353210 cgtaacacaatatataagactcgtgatt------atccaatcttccgtgtgtaaggtggaagccccccaaaatggttttccaaaaatgggtgattaaaag 45353303  T
Q  192 atcgaatcactatgcgtatcttggtggtcattactttataatttctttttggcttactc 250  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  45353304 atcgaatcactatgcgtatcttggtagtcattactttataatttctttttggctgactc 45353362  T

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Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 92 - 250
Target Start/End: Original strand, 45362689 - 45362841
Alignment:
Q  92 cgtaacacagtatataagactcgtgattcaggcaatccaatcttccgtgtgtaaggcggaagccccccaaaattgttttccaaaaatgggtgatcaaaag 191  Q
    ||||||||| ||||||||||||||||||      |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||    
T  45362689 cgtaacacaatatataagactcgtgatt------atccaatcttccgtgtgtaaggaggaagccccccaaaatggttttccaaaaatgggtgattaaaag 45362782  T
Q  192 atcgaatcactatgcgtatcttggtggtcattactttataatttctttttggcttactc 250  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  45362783 atcgaatcactatgcgtatcttggtagtcattactttataatttctttttggctgactc 45362841  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 45354782 - 45354835
Alignment:
Q  92 cgtaacacagtatataagactcgtgattcaggcaatccaatcttccgtgtgtaa 145  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  45354782 cgtaacacaatatataagactcgtgattcaggcaatccaatcttccgcgtgtaa 45354835  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 45368523 - 45368576
Alignment:
Q  92 cgtaacacagtatataagactcgtgattcaggcaatccaatcttccgtgtgtaa 145  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  45368523 cgtaacacaatatataagactcgtgattcaggcaatccaatcttccgcgtgtaa 45368576  T

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Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 297 - 420
Target Start/End: Original strand, 19744677 - 19744800
Alignment:
Q  297 ggaaggggataatcttcagtaatggcctacaaatagtactgcactaatttggtttctactaatatttttgtacaagtaattgcttactaaatttccgtgt 396  Q
    |||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||| |||||| |||||||| ||||||||||| |||||||||| || |    
T  19744677 ggaagggggtaatcttcagtaatggcttgcaaatagtactgccctaatttggtttcaactaatttttttgtagaagtaattgctcactaaatttcagtat 19744776  T
Q  397 ttgcaatcatttgatactaattgt 420  Q
    ||||||||  ||||||||||||||    
T  19744777 ttgcaatcccttgatactaattgt 19744800  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 19744612 - 19744653
Alignment:
Q  28 aacttggacaaagaatgaagaatagcaattgtggaagaacaa 69  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  19744612 aacttggacaaagaaagacgaatagcaattgtggaagaacaa 19744653  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 4014404 - 4014358
Alignment:
Q  253 cttcctgttctattgatcagaagcatccagcagcgccacggaatgga 299  Q
    ||||||||||||||||||||||||| || |||||| ||| |||||||    
T  4014404 cttcctgttctattgatcagaagcaccccgcagcgtcacagaatgga 4014358  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 416
Target Start/End: Original strand, 1092646 - 1092721
Alignment:
Q  340 ctaatttggtttctactaatatttttgtacaagtaattgcttactaaatttccgtgtttgcaatcatttgatactaa 416  Q
    ||||||||||||||| | || ||||| |||||||||||||| |||||||||| || |||||||||  ||||||||||    
T  1092646 ctaatttggtttctaattattttttt-tacaagtaattgctcactaaatttcagtatttgcaatcccttgatactaa 1092721  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 1092555 - 1092600
Alignment:
Q  28 aacttggacaaagaatgaagaatagcaattgtggaagaacaatgat 73  Q
    ||||||||||||||| || ||||| ||||||||||| |||||||||    
T  1092555 aacttggacaaagaaagacgaataacaattgtggaaaaacaatgat 1092600  T

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