View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_23 (Length: 417)
Name: NF9388_low_23
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 100 - 400
Target Start/End: Original strand, 42984080 - 42984379
Alignment:
| Q |
100 |
atgcttttggttgattatcatttgatggtgtatgcccggcagcagatcatcgccaattcgccatagctccacgtccaactcctagatcttagaagttggt |
199 |
Q |
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| T |
42984080 |
atgcttttggttgattatcatttgatggtgtatgcccggcagcagatcatcgccaattcgccatagctccacgtccaactcctagatcttagaagttggt |
42984179 |
T |
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| Q |
200 |
ggttccaaagaacatgtaaaataacaaaataatatgtgatgagactcttactcagaatatttaatttcctttacaaaaccatcccattgctccataaaac |
299 |
Q |
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| T |
42984180 |
ggttctgaagaacatgtaaaataacaaaataatatgtgatgagactcttactcagaatatttaatttcctttacaaaaccatcccattgctccataaaac |
42984279 |
T |
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| Q |
300 |
caaactattcctcaataaaactattatcttggtaaccaaatatctagtatattgacaagnnnnnnnnngaaattagagctaataacaatagccaatacag |
399 |
Q |
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| T |
42984280 |
caaactattcctcaataaaactattatcttggtaaccaaatatctagtatattgacaag-aaaaaaaagaaattagagctaataacaatagccaatacag |
42984378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 42984012 - 42984080
Alignment:
| Q |
1 |
ggcatgagcgattctcgtcttgacaataaagttatgcaagattctctttgtaatgtggagtcatggcga |
69 |
Q |
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| T |
42984012 |
ggcatgagcgattctcgtcttgacaataaagttacgcaagattctctttgtaatgtggagtcatggcga |
42984080 |
T |
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