View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_26 (Length: 391)
Name: NF9388_low_26
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_26 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 52964223 - 52963989
Alignment:
| Q |
1 |
cccacgtgctatgaaccttttcccatgctgctccttatccaaaatcgttcttcttgtttggaatcaaatcaaaccaaagttgacttatttgctcggctta |
100 |
Q |
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| T |
52964223 |
cccacgtgctatgaactttttcccatgctgctccttatccaaaatcgttcttcttgtttggaatcaaatcaaaccaaagttgacttatttgctcggctta |
52964124 |
T |
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| Q |
101 |
tttgatccaatggaatcaaataatttcattttggacatcggattttaggtgattgtgggttcaagttttgagtttaatttggtttaatttctggatttat |
200 |
Q |
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| T |
52964123 |
tttg----------atcaaataatttcattttggacatcgga--ttaggtgattctgggttcaagttttga----------gtttaatttatggatttat |
52964046 |
T |
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| Q |
201 |
gttaagtttgttaacttctggatttttgttatttggtgatgaagaggaagagataaa |
257 |
Q |
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| T |
52964045 |
gttaagtttgttaatttctggatttttgttatttggtgatgaaggagaagagataaa |
52963989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 52969330 - 52969252
Alignment:
| Q |
12 |
tgaaccttttcccatgctgctc--cttatccaaaatcgttcttcttgtttggaatcaaatcaaaccaaagttgacttat |
88 |
Q |
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| T |
52969330 |
tgaactttttcccatgctgctctccttatccaaaatggttcctcttgtttggaatcaaatcaaaccaaagttgacttat |
52969252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 52963924 - 52963866
Alignment:
| Q |
322 |
caccatgaagaggaagaagatgttgtgttggtcatctttggagaagaagagaaaagaac |
380 |
Q |
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| T |
52963924 |
caccatgaagaggaagaagatgttgtgttggtcatcgttggagaagaagaggaaagaac |
52963866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 391
Target Start/End: Complemental strand, 6029065 - 6029007
Alignment:
| Q |
336 |
agaagatgttgtgttggtcatctttggagaagaagag---aaaagaacttgtgattttt |
391 |
Q |
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| T |
6029065 |
agaagatgttgtgttggtgatcgctggagaagaagaggagaaaagaacttgtgattttt |
6029007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 391
Target Start/End: Original strand, 6029734 - 6029792
Alignment:
| Q |
336 |
agaagatgttgtgttggtcatctttggagaagaa---gagaaaagaacttgtgattttt |
391 |
Q |
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| T |
6029734 |
agaagatgttgtgttggtgatcgctggagaagaagaggagaaaagaacttgtgattttt |
6029792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 13116781 - 13116742
Alignment:
| Q |
200 |
tgttaagtttgttaacttctggatttttgttatttggtga |
239 |
Q |
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| T |
13116781 |
tgttaagtttcttaatttctggatttttgttatttggtga |
13116742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 391
Target Start/End: Complemental strand, 45280028 - 45279970
Alignment:
| Q |
336 |
agaagatgttgtgttggtcatctttggagaagaa---gagaaaagaacttgtgattttt |
391 |
Q |
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| T |
45280028 |
agaagatgttgtgttggtgatcgctggagaagaataggagaaaagaagttgtgattttt |
45279970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 15233697 - 15233736
Alignment:
| Q |
200 |
tgttaagtttgttaacttctggatttttgttatttggtga |
239 |
Q |
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| T |
15233697 |
tgttaagtttcttaatttctggatttttgttatttggtga |
15233736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 10731350 - 10731304
Alignment:
| Q |
211 |
ttaacttctggatttttgttatttggtgatgaagaggaagagataaa |
257 |
Q |
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| T |
10731350 |
ttaatttctggatttttgttattttgttatgaaggggaagagataaa |
10731304 |
T |
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