View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_27 (Length: 380)
Name: NF9388_low_27
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 3569272 - 3568926
Alignment:
| Q |
13 |
agattcagatgcaaacatgaccatgattg-atcgcaatttaaaactttgaccaaaacattgtattctagtcaatgatgtgtgcttttggagacttgaaca |
111 |
Q |
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| T |
3569272 |
agattcagatgcaaacatgaccatgattggatcgcaatttaaaaccttgaccaaaacattgcattctagtcaatgatgtgtgcttttggagacttgaaca |
3569173 |
T |
|
| Q |
112 |
ttaccttggctccttgcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaaca |
211 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569172 |
ttaccctggctccttgcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaacg |
3569073 |
T |
|
| Q |
212 |
cttgtcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttctcgttcttgtgtggataa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||| |
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| T |
3569072 |
cttgtcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaaaacaaccattggcatccaagttcccc------ttcttgtgtggataa |
3568979 |
T |
|
| Q |
312 |
aagaagtaataatagggtatacatccaataggacctgcgttgtgaatccaaaa |
364 |
Q |
| |
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||| || || |||||||| |||||||||||||||| ||||||||| |||| |
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| T |
3568978 |
tagatgttatcatagggtaagcatccaataggacctgtattgtgaatcgaaaa |
3568926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 105 - 364
Target Start/End: Complemental strand, 3602184 - 3601924
Alignment:
| Q |
105 |
ttgaacattaccttggctccttgcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagc |
204 |
Q |
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|||||||||||||||| ||||||| |||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3602184 |
ttgaacattaccttggttccttgcattgctgataagtgtatatttgaccgtgtaaacatcaacatatgtaaatttggctaatggaaacattctccttagc |
3602085 |
T |
|
| Q |
205 |
tgaaacacttg-tcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttctcgttcttgt |
303 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602084 |
tgaaacacttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttctcgttcttgt |
3601985 |
T |
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| Q |
304 |
gtggataaaagaagtaataatagggtatacatccaataggacctgcgttgtgaatccaaaa |
364 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
3601984 |
gtggataaaagaagtaataatagggtatacattcaataggacctgtgttgtgaatccaaaa |
3601924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 111 - 364
Target Start/End: Complemental strand, 14341058 - 14340804
Alignment:
| Q |
111 |
attaccttggctccttgcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaac |
210 |
Q |
| |
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|||||||||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14341058 |
attaccttggctccttgcattgctgataagtgtatatttgactgtgtaaacatcaacatatgtaaatttggctaatggaaacattctccttagctgaaac |
14340959 |
T |
|
| Q |
211 |
acttg-tcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttctcgttcttgtgtggat |
309 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14340958 |
acttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttctcgttcttgtgtggat |
14340859 |
T |
|
| Q |
310 |
aaaagaagtaataatagggtatacatccaataggacctgcgttgtgaatccaaaa |
364 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14340858 |
aaaagaagtaataatagggtatacatccaataggacctgtattgtgaatccaaaa |
14340804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 3591337 - 3591052
Alignment:
| Q |
13 |
agattcagatgcaaacatgaccatgattg-atcgcaatttaaaactttgaccaaaacattgtattctagtcaatgatgtgtgcttttggagacttgaaca |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||| ||||||||||| ||||| || |||||| ||||||||||||||||| | |||||||||||||||||| |
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|
| T |
3591337 |
agattgagatgcaaacatgaccatgattggatcacaatttaaaaccttgacaaatacattgcattctagtcaatgatgtattcttttggagacttgaaca |
3591238 |
T |
|
| Q |
112 |
ttaccttggc--tccttgcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaa |
209 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3591237 |
ttaccttggtattccttgcgttgctgataagtttatattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaa |
3591138 |
T |
|
| Q |
210 |
cactt-gtcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttct |
294 |
Q |
| |
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||||| ||||||||||| || ||| ||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3591137 |
cacttggtcttttagctaccagttatattcttgagcaagcttattgtgaggtttaacacagccattggcatctaagttacccttct |
3591052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 39 - 364
Target Start/End: Complemental strand, 1409653 - 1409333
Alignment:
| Q |
39 |
ttgatcgcaatttaaaactttgaccaaaacattgtattctagtcaatgatgtgtgcttttggagacttgaacattaccttggctccttgcgttgctgata |
138 |
Q |
| |
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||||||||||| ||||| ||| |||| ||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| ||||| ||| |
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| T |
1409653 |
ttgatcgcaatacaaaaccttggccaagacattatattctagtcaatgatgtgtgctttttgagtcttgaacattaccttggctctttgcattgctaata |
1409554 |
T |
|
| Q |
139 |
agtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaacac-ttgtcttttagctgcctgttctatt |
237 |
Q |
| |
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||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| |
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| T |
1409553 |
agtttatatttggctgtgtacacatcaacatatgtaaacttggctaatggaaactttcgccttagctgaaacactttgtcttttagctgcctgttatatt |
1409454 |
T |
|
| Q |
238 |
cctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttctcgttcttgtgtggataaaagaagtaataatagggtatacatcc |
337 |
Q |
| |
|
| ||||||||||| ||||||||| |||||||||||| | |||||||||||||| ||||||||||||||| ||| || || |||||| | ||||| |
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| T |
1409453 |
cttgagcaagctcattgtgaggtataacacagccatagacatccaagttaccc------ttcttgtgtggataatagatgttattatagggcaagcatcc |
1409360 |
T |
|
| Q |
338 |
aataggacctgcgttgtgaatccaaaa |
364 |
Q |
| |
|
||| |||||| | |||||||||||||| |
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|
| T |
1409359 |
aattggacctacattgtgaatccaaaa |
1409333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 294
Target Start/End: Complemental strand, 1412630 - 1412443
Alignment:
| Q |
108 |
aacattaccttggctccttgcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctga |
207 |
Q |
| |
|
||||| |||| |||||||||| |||||||| |||| ||||| || |||| | ||||||||||||||||||||| | | | ||||||||||| | | |
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|
| T |
1412630 |
aacatcacctcggctccttgcattgctgattagttcatatttggctttgtacatatcaacatatgtaaatttggcctgtaggagttttctccttagataa |
1412531 |
T |
|
| Q |
208 |
aacactt-gtcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttct |
294 |
Q |
| |
|
|||||| ||| ||||||| | |||| |||| ||||| | | ||| |||||||| |||||||||||||| || | ||||||||||| |
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|
| T |
1412530 |
gacacttggtcctttagcttcttgttaaattcttgagctattttgttctgaggtttcacacagccattggcgtctaggttacccttct |
1412443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 182
Target Start/End: Complemental strand, 1417306 - 1417191
Alignment:
| Q |
66 |
aacattgtattctagtcaatgatgtgtgcttttggagacttgaacattaccttggctccttgcgttgctgataagtttctattttactgtgtaaacatca |
165 |
Q |
| |
|
||||||| |||||| |||||| ||| | ||||| |||||| || || |||||||||| |||| |||||||| |||| | ||| || |||| | |||| |
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|
| T |
1417306 |
aacattgcattctactcaatggtgttttcttttaaagacttaaa-atcaccttggctctttgcattgctgattagttcatgtttggctttgtacatatca |
1417208 |
T |
|
| Q |
166 |
acatatgtaaatttggc |
182 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1417207 |
acatatgtaaatttggc |
1417191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 1421747 - 1421679
Alignment:
| Q |
114 |
accttggctccttgcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggc |
182 |
Q |
| |
|
|||||||||| |||| |||||||| |||| ||||| || |||| | ||||||||||||||||||||| |
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|
| T |
1421747 |
accttggctctttgcattgctgattagttcatatttagctttgtacatatcaacatatgtaaatttggc |
1421679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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