View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388_low_29 (Length: 362)

Name: NF9388_low_29
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388_low_29
NF9388_low_29
[»] chr2 (11 HSPs)
chr2 (18-342)||(39217273-39217597)
chr2 (18-154)||(39372205-39372341)
chr2 (36-152)||(39379482-39379598)
chr2 (18-215)||(39396156-39396357)
chr2 (18-154)||(39179715-39179851)
chr2 (18-154)||(39386259-39386395)
chr2 (31-156)||(39425211-39425336)
chr2 (68-278)||(39188300-39188510)
chr2 (43-154)||(39159389-39159500)
chr2 (38-157)||(39493005-39493124)
chr2 (68-156)||(39145159-39145247)
[»] chr6 (1 HSPs)
chr6 (18-154)||(16115262-16115398)
[»] chr5 (1 HSPs)
chr5 (81-154)||(33563382-33563455)


Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 39217597 - 39217273
Alignment:
Q  18 cattctggacgaattctcgcaagagatcaactagttgattattgtcagccaagttgtatgcataactgaatctaacagctccaacaaattgttttttcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39217597 cattctggacgaattctcgcaagagatcaactagttgattattgtcagccaagttgtatgcataactgaatctaacagctccaacaaattgttttttcct 39217498  T
Q  118 aataagattcttaacaaaacctgcaaggtgcaagaaaattttcaccatcaaaaacttaccagaatagacataaaataagttccaattaacaaaaaactag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39217497 aataagattcttaacaaaacctgcaaggtgcaagaaaattttcaccatcaaaaacttaccagaatagacataaaataagttccaattaacaaaaaactag 39217398  T
Q  218 gcaaattggaccggctatttgaaaatttatcaaaacatttggatgatagaagagatacataaaaagataaatttcaagtttattccattttccaatcatc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39217397 gcaaattggaccggctatttgaaaatttatcaaaacatttggatgatagaagagatacataaaaagataaatttcaagtttattccattttccaatcatc 39217298  T
Q  318 aacactaaaatgtcaattcttcctc 342  Q
    |||||||||||||||||||||||||    
T  39217297 aacactaaaatgtcaattcttcctc 39217273  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 39372341 - 39372205
Alignment:
Q  18 cattctggacgaattctcgcaagagatcaactagttgattattgtcagccaagttgtatgcataactgaatctaacagctccaacaaattgttttttcct 117  Q
    |||||||||||  |||| |||||||||||||||||| ||| ||||  |||||||| |||||| || |||||||||||||| |||||||||| ||  ||||    
T  39372341 cattctggacgtgttcttgcaagagatcaactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcct 39372242  T
Q  118 aataagattcttaacaaaacctgcaaggtgcaagaaa 154  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  39372241 aataagattctcaacaaaatctgcaaggtgcaagaaa 39372205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 39379482 - 39379598
Alignment:
Q  36 gcaagagatcaactagttgattattgtcagccaagttgtatgcataactgaatctaacagctccaacaaattgttttttcctaataagattcttaacaaa 135  Q
    |||||||||||||| ||| | | |||||||||||||| |||||| ||||||||||||||||| |||||||||| ||  || | |||||||||| ||||||    
T  39379482 gcaagagatcaacttgtttagtcttgtcagccaagttatatgcacaactgaatctaacagctacaacaaattgcttcctcttgataagattctcaacaaa 39379581  T
Q  136 acctgcaaggtgcaaga 152  Q
    | |||||||||||||||    
T  39379582 atctgcaaggtgcaaga 39379598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 39396156 - 39396357
Alignment:
Q  18 cattctggacgaattctcgcaagagatcaactagttgattattgtcagccaagttgtatgcataactgaatctaacagctccaacaaattgttttttcct 117  Q
    |||||||||||  ||||||||| | ||||| |  |||||| | |||||||||||| || ||| ||||||||||||||||| ||||||| || ||| ||||    
T  39396156 cattctggacgtgttctcgcaacatatcaattgattgattttcgtcagccaagttatacgcacaactgaatctaacagctacaacaaactgctttctcct 39396255  T
Q  118 aataagattcttaacaaaacctgcaaggtgcaagaaaattttcaccatcaaaaacttacc-----agaatagacataaaataagttccaattaacaaaaa 212  Q
     |||||||| ||||||||| |||| |||  ||||||| ||| |  |||  ||||||||||     |||| ||| |||||||||||||  |||||||||||    
T  39396256 gataagatttttaacaaaatctgcgaggaacaagaaattttacttcat-taaaacttaccagaaaagaacagatataaaataagttctgattaacaaaaa 39396354  T
Q  213 act 215  Q
    |||    
T  39396355 act 39396357  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 39179851 - 39179715
Alignment:
Q  18 cattctggacgaattctcgcaagagatcaactagttgattattgtcagccaagttgtatgcataactgaatctaacagctccaacaaattgttttttcct 117  Q
    |||||||||||  ||||||||| | ||||||||  ||||  |||||| ||||||| |||||| ||||||||||||||||| |||||| ||| ||  |  |    
T  39179851 cattctggacgtgttctcgcaacatatcaactaaatgatccttgtcatccaagttatatgcacaactgaatctaacagctgcaacaatttgcttcctgtt 39179752  T
Q  118 aataagattcttaacaaaacctgcaaggtgcaagaaa 154  Q
     ||||||| |||||||||| ||||||| |||||||||    
T  39179751 gataagatgcttaacaaaatctgcaagatgcaagaaa 39179715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 39386259 - 39386395
Alignment:
Q  18 cattctggacgaattctcgcaagagatcaactagttgattattgtcagccaagttgtatgcataactgaatctaacagctccaacaaattgttttttcct 117  Q
    ||||||||| |  ||||||||| | | |||||| | |||| |||||  ||||||| |||||| ||||||||||||||||| |||||||||| ||  || |    
T  39386259 cattctggatgtgttctcgcaacataccaactaatcgattcttgtcgtccaagttatatgcacaactgaatctaacagcttcaacaaattgcttcctctt 39386358  T
Q  118 aataagattcttaacaaaacctgcaaggtgcaagaaa 154  Q
     ||||||| |||||||||| ||| ||| |||||||||    
T  39386359 gataagatgcttaacaaaatctggaagatgcaagaaa 39386395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 39425211 - 39425336
Alignment:
Q  31 ttctcgcaagagatcaactagttgattattgtcagccaagttgtatgcataactgaatctaacagctccaacaaattgttttttcctaataagattctta 130  Q
    |||||||||||||||||||| |||||||||||    ||||||  ||||| ||||||||  ||||||| ||||| |||||| | || |  | ||||| | |    
T  39425211 ttctcgcaagagatcaactaattgattattgttgctcaagttaaatgcacaactgaatgaaacagcttcaacatattgttctctctttctcagattatca 39425310  T
Q  131 acaaaacctgcaaggtgcaagaaaat 156  Q
    |||||| |||||||||||||||||||    
T  39425311 acaaaatctgcaaggtgcaagaaaat 39425336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 278
Target Start/End: Original strand, 39188300 - 39188510
Alignment:
Q  68 aagttgtatgcataactgaatctaacagctccaacaaattgttttttcctaataagattcttaacaaaacctgcaaggtgcaagaaaattttcaccatca 167  Q
    ||||| |||||| ||||||||||||||||| || || |||| | |||| | |||||| |||  |||||| |||| ||||||||||||| | ||| |||||    
T  39188300 aagttatatgcacaactgaatctaacagcttcatcatattgctgtttcttgataagactctgtacaaaatctgccaggtgcaagaaaa-tctca-catca 39188397  T
Q  168 --aaaacttaccagaatagacataaaataagttccaattaacaaaaaactaggcaaattggaccggctatttgaaaatttatcaaaacatttggatgata 265  Q
      |||||| ||||||| ||  ||||||||||||| | |||||||||| ||  ||| ||||||| |  || || |||| || ||||| |||||| |  |||    
T  39188398 ctaaaactgaccagaacagctataaaataagttctagttaacaaaaatcttagcagattggactgaatagttcaaaagttgtcaaaccatttgaaaaata 39188497  T
Q  266 gaagagatacata 278  Q
    ||||| |||||||    
T  39188498 gaagaaatacata 39188510  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 39159500 - 39159389
Alignment:
Q  43 atcaactagttgattattgtcagccaagttgtatgcataactgaatctaacagctccaacaaattgttttttcctaataagattcttaacaaaacctgca 142  Q
    ||||| ||||| ||| |||| ||||||||| |||||| ||||||||||||||||| ||  |  ||| ||  || |||||||||| ||||||||| || ||    
T  39159500 atcaattagttaattcttgtaagccaagttatatgcacaactgaatctaacagcttcagtagtttgcttcctcataataagatttttaacaaaatctaca 39159401  T
Q  143 aggtgcaagaaa 154  Q
    |||| |||||||    
T  39159400 aggtacaagaaa 39159389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 39493005 - 39493124
Alignment:
Q  38 aagagatcaactagttgattattgtcagccaagttgtatgcataactgaatctaacagctccaacaaattgttttttcctaataagattcttaacaaaac 137  Q
    ||||||||||||||||||||||||||    ||||| ||| ||   |||||||| |||||| || || ||||   || | | ||||||||||| |||||||    
T  39493005 aagagatcaactagttgattattgtcgctgaagttatatacacggctgaatctgacagcttcatcatattgccgttgcttgataagattcttgacaaaac 39493104  T
Q  138 ctgcaaggtgcaagaaaatt 157  Q
    |||||||||| |||||||||    
T  39493105 ctgcaaggtgtaagaaaatt 39493124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 39145247 - 39145159
Alignment:
Q  68 aagttgtatgcataactgaatctaacagctccaacaaattgttttttcctaataagattcttaacaaaacctgcaaggtgcaagaaaat 156  Q
    ||||| |||||| ||||||||||||||||| || || |||| | | || | |||||| |||  |||||| |||| ||||||||||||||    
T  39145247 aagttatatgcacaactgaatctaacagcttcatcatattgctgtctcttgataagactctgtacaaaatctgctaggtgcaagaaaat 39145159  T

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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 16115398 - 16115262
Alignment:
Q  18 cattctggacgaattctcgcaagagatcaactagttgattattgtcagccaagttgtatgcataactgaatctaacagctccaacaaattgttttttcct 117  Q
    |||||||||||  ||||||||| | ||||| || ||| || |||||||||||||| |||||| | ||||||||||||||| |||||||||| ||| ||||    
T  16115398 cattctggacgtgttctcgcaacatatcaattaattggttcttgtcagccaagttatatgcacagctgaatctaacagcttcaacaaattgctttctcct 16115299  T
Q  118 aataagattcttaacaaaacctgcaaggtgcaagaaa 154  Q
     |||||||  ||||||||| ||||||||| |||||||    
T  16115298 gataagatatttaacaaaatctgcaaggtacaagaaa 16115262  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 33563455 - 33563382
Alignment:
Q  81 aactgaatctaacagctccaacaaattgttttttcctaataagattcttaacaaaacctgcaaggtgcaagaaa 154  Q
    ||||||||||||||||| |||||| ||| ||  |  | ||||||| |||||||||| ||||||| |||||||||    
T  33563455 aactgaatctaacagctgcaacaatttgcttcctgttgataagatgcttaacaaaatctgcaagatgcaagaaa 33563382  T

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