View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_3 (Length: 622)
Name: NF9388_low_3
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 3239250 - 3238935
Alignment:
| Q |
18 |
tgatcaataacattccctatatcaaaagaagtttcatataatgatgagaaatggatccaaaatcaatggcttctggatttgaaggaataaccatcttcct |
117 |
Q |
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| T |
3239250 |
tgatcaataacattccctatatcaaaagaagtttcata--atgatgagaaatggatccaaaatcaatggcttctggatttgaaggaataaccatcttcct |
3239153 |
T |
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| Q |
118 |
catttcaatgtttttatagctccttcaacatcttaattctcttcaaaggtactcctattgttttatttattttttctctgatcatgtttacccttaacaa |
217 |
Q |
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| T |
3239152 |
catttcaatgtttttatagctccttcaacgtcttaattctcttcaaaggtactcctattgttttatttattttatctctgatcatgtttacccttaacaa |
3239053 |
T |
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| Q |
218 |
ttttcttaatctccacattaatatgacaacaaattaattaatcatctttgtattcttataatcaaataccaatcttcaatcattcatattatagactaat |
317 |
Q |
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| T |
3239052 |
ttttcttaatctccacattaatatgacaacaaattaattaatcatctttgtattcttataatcaaataccaatcttcaatcattcatattatagactaat |
3238953 |
T |
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| Q |
318 |
ataggaaaggttcctctt |
335 |
Q |
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|||||||||||||||||| |
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| T |
3238952 |
ataggaaaggttcctctt |
3238935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 320 - 607
Target Start/End: Complemental strand, 3238917 - 3238630
Alignment:
| Q |
320 |
aggaaaggttcctcttaaatcacatgcattgaactcatcccttttattgaattcataattgtgtacaatatttaattattcannnnnnnatgaccaaagt |
419 |
Q |
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| T |
3238917 |
aggaaaggttcctcttaaatcacatgcattgaactaatcccttttattgaattcataattgtgtacaatatttaattattcatttttttatgaccaaagt |
3238818 |
T |
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| Q |
420 |
ttaatcatgcatattcatattgtgacaggcaacaaaagcattaaaattaggatttttgcttctacattttgccattctaataggctaccatattgagctt |
519 |
Q |
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| T |
3238817 |
ttaatcatgcatattcatattgtgacaggcaacaaaagcattaaaattaggatttttgcttctacattttgccattctaataggctaccatattgagctt |
3238718 |
T |
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| Q |
520 |
gggtttgtgattccaccatgacgattaaagggatctacaaaagttttaagtacatatcccaaatttttggtaatttatctatcctttg |
607 |
Q |
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| T |
3238717 |
gggtttgtgattccaccatgacgattaaagggatctacaaaagttttaagtacatatcccaaatttttggtaatttatctatcctttg |
3238630 |
T |
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