View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_30 (Length: 358)
Name: NF9388_low_30
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_30 |
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| [»] scaffold0048 (2 HSPs) |
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Alignment Details
Target: scaffold0048 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 142 - 354
Target Start/End: Complemental strand, 16343 - 16131
Alignment:
| Q |
142 |
tcacaacatcacactgacgatatcaaccagcacatccctcccataaaacaactacatccaataactaatttgcccagaaatactgctcaacttgaaaagc |
241 |
Q |
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| T |
16343 |
tcacaacatcacactgctgatatcaaccaggacttccctcccataaaacaactacttccaaaatctaatttgcccagaaatacaactcaacttgaaaagc |
16244 |
T |
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| Q |
242 |
tggtccatcttcaccggtgcttgtcaagggaggcactgcagtccggagaaccaacattggaggagggcacatgaaaactatcttattgttagctgcctca |
341 |
Q |
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| T |
16243 |
tggtccatcttcaccggtgcttgtggagggaggtactgcagtccggagaaccaacatcggaggagggcacatgaaaacgatcctattgttagctgcctca |
16144 |
T |
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| Q |
342 |
gtaacaccaaact |
354 |
Q |
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| T |
16143 |
gttacaccaaact |
16131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 16483 - 16413
Alignment:
| Q |
1 |
aacacttaacttttcattcaatggcacaataacattacatcaagtcttatacttaataaaacattaagttg |
71 |
Q |
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|||||||||||| |||||||| |||||| |||||||||||||||||| ||||||| |||||||||||||| |
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| T |
16483 |
aacacttaacttcacattcaatagcacaacaacattacatcaagtcttctacttaaaaaaacattaagttg |
16413 |
T |
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