View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388_low_31 (Length: 356)

Name: NF9388_low_31
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388_low_31
NF9388_low_31
[»] chr1 (4 HSPs)
chr1 (1-346)||(29442571-29442916)
chr1 (1-322)||(29452563-29452884)
chr1 (6-331)||(29467042-29467367)
chr1 (1-336)||(29423816-29424151)
[»] chr2 (24 HSPs)
chr2 (1-335)||(14550923-14551256)
chr2 (42-195)||(8572754-8572910)
chr2 (249-335)||(12005619-12005705)
chr2 (24-167)||(10372653-10372796)
chr2 (243-335)||(12018377-12018469)
chr2 (249-335)||(11986982-11987068)
chr2 (46-167)||(9292699-9292820)
chr2 (11-111)||(17565336-17565436)
chr2 (42-190)||(9316770-9316921)
chr2 (11-119)||(9329418-9329526)
chr2 (24-128)||(10336621-10336725)
chr2 (249-335)||(12012047-12012133)
chr2 (11-118)||(7612716-7612823)
chr2 (46-169)||(10353914-10354037)
chr2 (31-118)||(12011835-12011922)
chr2 (42-127)||(9283427-9283512)
chr2 (291-336)||(9365197-9365242)
chr2 (24-112)||(10348629-10348717)
chr2 (290-336)||(8579035-8579081)
chr2 (45-109)||(7114901-7114965)
chr2 (24-99)||(9060333-9060408)
chr2 (24-118)||(8578760-8578854)
chr2 (298-344)||(9275064-9275110)
chr2 (23-128)||(9275333-9275438)
[»] chr8 (2 HSPs)
chr8 (42-218)||(41965975-41966154)
chr8 (297-346)||(41966263-41966312)
[»] scaffold0667 (2 HSPs)
scaffold0667 (24-209)||(5185-5373)
scaffold0667 (298-344)||(5020-5066)
[»] chr4 (2 HSPs)
chr4 (42-167)||(26575650-26575775)
chr4 (294-322)||(561789-561817)
[»] chr3 (2 HSPs)
chr3 (42-167)||(37463293-37463418)
chr3 (298-348)||(37463037-37463087)
[»] chr5 (1 HSPs)
chr5 (33-113)||(36225575-36225655)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 29442571 - 29442916
Alignment:
Q  1 tacttaccggaatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29442571 tacttaccggaatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcat 29442670  T
Q  101 caaacttcacctccaaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgatgatttctctaacctaaccaccggcgtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29442671 caaacttcacctccaaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgaagatttctctaacctaaccaccggcgtt 29442770  T
Q  201 aaactcaacattcctttcacaggtcctatctaccgcatgtctcttctaggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttct 300  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29442771 aaactcaacattcctttcacaggtcccatcaaccgcatgtctcttctaggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttct 29442870  T
Q  301 ggaaccctaacatccgtaaacaccggattatcccttttccccctat 346  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||    
T  29442871 ggaaccctaacatccgtaaacaccggattatcccctttcctcctat 29442916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 29452563 - 29452884
Alignment:
Q  1 tacttaccggaatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcat 100  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || ||||||||    
T  29452563 tacttaccggtatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcat 29452662  T
Q  101 caaacttcacctccaaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgatgatttctctaacctaaccaccggcgtt 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| | ||||||||||||||||||||| || ||    
T  29452663 caaacttcacctccaaaattccctcaatcgttccttaatccttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcatt 29452762  T
Q  201 aaactcaacattcctttcacaggtcctatctaccgcatgtctcttctaggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttct 300  Q
    ||||||||  ||||||||| |   || | | ||  ||| |||||  |  ||||||||||||||||||||| |||| || ||||||  |||||||||||||    
T  29452763 aaactcaatcttcctttcaaactccccaacaacaacatctctctgttcagttcatgtaacggccttctcttcattaccaccaatgtcggaatcgctttct 29452862  T
Q  301 ggaaccctaacatccgtaaaca 322  Q
    ||||||||||||||||||||||    
T  29452863 ggaaccctaacatccgtaaaca 29452884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 6 - 331
Target Start/End: Original strand, 29467042 - 29467367
Alignment:
Q  6 accggaatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaac 105  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  29467042 accggaatcatctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaac 29467141  T
Q  106 ttcacctccaaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgatgatttctctaacctaaccaccggcgttaaact 205  Q
    ||||||||| ||||| ||||||||||| ||||||||||||||||||||  ||||||||||||||| | ||||||||||||||||||||| || |||||||    
T  29467142 ttcacctccgaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaact 29467241  T
Q  206 caacattcctttcacaggtcctatctaccgcatgtctcttctaggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaac 305  Q
    |||  ||||||||| |   || | | ||  ||| |||||  | ||||||||||||||||||||||||||||||  |||||  |||||||||||||||||     
T  29467242 caatcttcctttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccatcaatgtcggaatcgctttctggaat 29467341  T
Q  306 cctaacatccgtaaacaccggattat 331  Q
    ||||||||||||||||| ||||||||    
T  29467342 cctaacatccgtaaacatcggattat 29467367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 29424151 - 29423816
Alignment:
Q  1 tacttaccggaatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcat 100  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| | ||||||    
T  29424151 tactcaccggaatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatctctaatcgattcccacagcttcat 29424052  T
Q  101 caaacttcacctccaaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgatgatttctctaacctaaccaccggcgtt 200  Q
    ||| ||||||||||| |||| | |||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| |||| ||||    
T  29424051 caagcttcacctccataattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaactaccgccgtt 29423952  T
Q  201 aaactcaacattcctttcacaggtcctatctaccgcatgtctcttctaggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttct 300  Q
    ||||||||   |||||||| |||  | | | ||  ||| |||||  | || ||||||||||||||||||||| | | |||| ||| || |||||||||||    
T  29423951 aaactcaatcctcctttcaaaggctccaacaacttcatctctctggtcggatcatgtaacggccttctctgcctcttctccgatggtgaaatcgctttct 29423852  T
Q  301 ggaaccctaacatccgtaaacaccggattatccctt 336  Q
    ||||||||| |||| ||||||| || ||||||||||    
T  29423851 ggaaccctaccatctgtaaacatcgcattatccctt 29423816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 14551256 - 14550923
Alignment:
Q  1 tacttaccggaatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcat 100  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||| |||||| ||||| || ||||||||||||||||||||||||||||| ||||||||    
T  14551256 tactcaccagaatcctctctctgttaccgccacaatccctcctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcat 14551157  T
Q  101 caaacttcacctccaaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgatgatttctctaacctaaccaccggcgtt 200  Q
    ||||||||||||  |||||| ||||||| |||||||||||||||||||||| |   || ||||||||||| | ||||||||||||||||||||| || ||    
T  14551156 caaacttcacct-aaaaattccctcaattgttccttaatccttcgacacaagtccaatctctaccaaatcaacgatttctctaacctaaccacccgcatt 14551058  T
Q  201 aaactcaacattcctttcacaggtcctatctaccgcatgtctcttctaggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttct 300  Q
    ||||||||  ||||||||  |||    | | ||  ||| ||||| || |||||||||||||| ||||||| ||| |  |||||||  | ||| ||||| |    
T  14551057 aaactcaatcttcctttcgaaggcttcaacaacttcatctctctgctcggttcatgtaacggtcttctctacatcttttccaatggcgaaattgctttat 14550958  T
Q  301 ggaaccctaacatccgtaaacaccggattatccct 335  Q
    |||||||||||||||||||||| || |||||||||    
T  14550957 ggaaccctaacatccgtaaacatcgcattatccct 14550923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 8572754 - 8572910
Alignment:
Q  42 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatcc 141  Q
    ||||||||||| ||||| || ||||||||| ||||  ||||||||||||| ||||||| ||| ||||||||| |||||| |||||||||||||||||||     
T  8572754 ctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatca 8572853  T
Q  142 ttcgacacaactttgatttctaccaaatcgatg---atttctctaacctaaccaccg 195  Q
    |||||| |||||  ||| |||||||||||||||   |||||||| | ||||||||||    
T  8572854 ttcgacgcaactacgatatctaccaaatcgatgatgatttctctgatctaaccaccg 8572910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 12005619 - 12005705
Alignment:
Q  249 ggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacatccgtaaacaccggattatccct 335  Q
    ||||||||||||||||| ||||||||||||||||| || | |||| |||||||||||||||||||||||||||| ||||||||||||    
T  12005619 ggttcatgtaacggcctcctctgcatttcctccaaagccgaaatcactttctggaaccctaacatccgtaaacatcggattatccct 12005705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 10372796 - 10372653
Alignment:
Q  24 ttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcc 123  Q
    ||||||| | |||| || ||||||||||| ||||| || |||||| || ||||  ||||||||||||| || |||||||| |||||||||||||||| ||    
T  10372796 ttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctccaaaattccc 10372697  T
Q  124 tcaatcgttccttaatccttcgacacaactttgatttctaccaa 167  Q
    ||||||| ||||||||||||| || ||| || ||| ||||||||    
T  10372696 tcaatcgatccttaatccttcaacgcaaattcgatctctaccaa 10372653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 335
Target Start/End: Original strand, 12018377 - 12018469
Alignment:
Q  243 cttctaggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacatccgtaaacaccggattatccct 335  Q
    ||||| ||||||||||||||||| |||||||||||||||||    | ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  12018377 cttctcggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaacccttacatccgtaaacatcggattatccct 12018469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 11986982 - 11987068
Alignment:
Q  249 ggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacatccgtaaacaccggattatccct 335  Q
    ||||||||||||||||| |||||||||||||||||    | ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  11986982 ggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaaccctaacacccgtaaacatcggattatccct 11987068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 9292820 - 9292699
Alignment:
Q  46 gattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatccttcg 145  Q
    ||||||| ||||  || ||||||||| |||||||||||||||| || | |||||  || ||||||||| |||||| |||||| || ||||||||||||||    
T  9292820 gattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcg 9292721  T
Q  146 acacaactttgatttctaccaa 167  Q
    |||||| || ||| ||||||||    
T  9292720 acacaaattcgatctctaccaa 9292699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 17565336 - 17565436
Alignment:
Q  11 aatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcac 110  Q
    |||||||||||  ||||| | |||||||||||||||| |||| |||||||||||||||||| |||   |||| |||||||||||||||| ||| ||||||    
T  17565336 aatcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttcac 17565435  T
Q  111 c 111  Q
    |    
T  17565436 c 17565436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 9316921 - 9316770
Alignment:
Q  42 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaa---aatttcctcaatcgttccttaa 138  Q
    ||||||||||| ||||| || ||||||||| ||||  |||| ||||| || ||||||||||| ||||||||| ||   |||| ||||||||| |||||||    
T  9316921 ctccgattccgatcaacttcaaaatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaa 9316822  T
Q  139 tccttcgacacaactttgatttctaccaaatcgatgatttctctaacctaac 190  Q
    ||||||   |||| |  ||  |||||||||||||||||||| || |||||||    
T  9316821 tccttcattacaaatccgaactctaccaaatcgatgatttccctgacctaac 9316770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 9329526 - 9329418
Alignment:
Q  11 aatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcac 110  Q
    ||||||||| |  ||||||| | |||| || ||||||||||||||||| || ||||||||| ||||| ||||||||||||| |||||||  || ||||||    
T  9329526 aatcctctcccgcttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttcac 9329427  T
Q  111 ctccaaaat 119  Q
    ||| |||||    
T  9329426 ctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 10336725 - 10336621
Alignment:
Q  24 ttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcc 123  Q
    ||||||| | |||| || ||||||||||| ||||| || ||||||||| ||||| |||||||||| || || |||||||| |||||||| ||||||| ||    
T  10336725 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaaaattccc 10336626  T
Q  124 tcaat 128  Q
    |||||    
T  10336625 tcaat 10336621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 12012047 - 12012133
Alignment:
Q  249 ggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacatccgtaaacaccggattatccct 335  Q
    |||||||||||||||||  ||||||||||||| ||  | | || ||| |||||||||||||||||||||||||| | ||||||||||    
T  12012047 ggttcatgtaacggcctcatctgcatttcctcaaacaccgaaaccgcgttctggaaccctaacatccgtaaacatcagattatccct 12012133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 7612823 - 7612716
Alignment:
Q  11 aatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcac 110  Q
    |||||||||||  ||||||| |||| |||||||||||||||| ||||  || ||||| ||| ||||| |||| |||||||| |||||||  || ||||||    
T  7612823 aatcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcac 7612724  T
Q  111 ctccaaaa 118  Q
    ||| ||||    
T  7612723 ctcaaaaa 7612716  T

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Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 169
Target Start/End: Complemental strand, 10354037 - 10353914
Alignment:
Q  46 gattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatccttcg 145  Q
    ||||||| ||||| || |||||| || ||||||||||||||||| | || |||||||| |||||||||  ||||| || |||||  |||||||| |||||    
T  10354037 gattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaatcaatccttaattcttcg 10353938  T
Q  146 acacaactttgatttctaccaaat 169  Q
    |  ||| || ||| ||||||||||    
T  10353937 attcaaattcgatatctaccaaat 10353914  T

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Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 12011835 - 12011922
Alignment:
Q  31 cacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaa 118  Q
    ||||||| || ||||||||||| ||||| || ||||||||| ||||| |||||||||| || ||||||| ||| ||||||||| ||||    
T  12011835 cacaatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcacctcaaaaa 12011922  T

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Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 9283427 - 9283512
Alignment:
Q  42 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaa 127  Q
    ||||||||||| ||||| || |||||||||| ||||||||| ||||| || || |||||||| ||||||||| ||| || ||||||    
T  9283427 ctccgattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttccctcaa 9283512  T

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Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 9365242 - 9365197
Alignment:
Q  291 atcgctttctggaaccctaacatccgtaaacaccggattatccctt 336  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  9365242 atcgctttctggaaccctaacatccgtaaacatcggatcatccctt 9365197  T

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Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 10348717 - 10348629
Alignment:
Q  24 ttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacct 112  Q
    ||||||| | |||| || ||||||||||| ||||| || ||||||||| ||||| ||||||||||||  || |||||||| ||||||||    
T  10348717 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttcacct 10348629  T

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Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 8579035 - 8579081
Alignment:
Q  290 aatcgctttctggaaccctaacatccgtaaacaccggattatccctt 336  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||    
T  8579035 aatcgctttctggaaccctaacatccgtaaacatcgagttatccctt 8579081  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 7114901 - 7114965
Alignment:
Q  45 cgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttca 109  Q
    |||||||| ||||| || ||||||||| ||||| ||||||||||||| || |||||||| |||||    
T  7114901 cgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttca 7114965  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 9060333 - 9060408
Alignment:
Q  24 ttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttca 99  Q
    |||||||  ||||| || ||||||||||| ||||| || ||||||||| ||||| |||||||||| || |||||||    
T  9060333 ttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgattctcacaacttca 9060408  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 8578760 - 8578854
Alignment:
Q  24 ttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaa 118  Q
    ||||||| ||||||||| ||||||||||| ||||  || |||||||||| |||| | || |||||||| | ||||| ||||| | ||||| ||||    
T  8578760 ttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattacctcaaaaa 8578854  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 9275110 - 9275064
Alignment:
Q  298 tctggaaccctaacatccgtaaacaccggattatcccttttccccct 344  Q
    ||||||||||||||| | ||||||| |||||||||||||||| ||||    
T  9275110 tctggaaccctaacaccggtaaacatcggattatcccttttctccct 9275064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 9275438 - 9275333
Alignment:
Q  23 gttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttc 122  Q
    |||||| | |||||| || ||| ||||||| ||||  || ||||||||| ||||  | || |||||||| ||||||||||| ||||| ||| |||||| |    
T  9275438 gttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttcatctcaaaaattcc 9275339  T
Q  123 ctcaat 128  Q
    ||||||    
T  9275338 ctcaat 9275333  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 42 - 218
Target Start/End: Original strand, 41965975 - 41966154
Alignment:
Q  42 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatcc 141  Q
    ||||||||||| ||||| ||||||||||||| |||| ||||||||||||| ||||||||||| |||||||||  ||| | ||||||||| ||||||||||    
T  41965975 ctccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttcacctcagaaaatccctcaatcgatccttaatcc 41966074  T
Q  142 ttcgacacaactttgatttctaccaaatcgat---gatttctctaacctaaccaccggcgttaaactcaacattcctttc 218  Q
    |||||| ||||  |||| |||||||  |||||   |||||||||||||||||||||| ||||  |||||||  |||||||    
T  41966075 ttcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactcaaccatcctttc 41966154  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 41966263 - 41966312
Alignment:
Q  297 ttctggaaccctaacatccgtaaacaccggattatcccttttccccctat 346  Q
    |||||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  41966263 ttctggaaccctaacatctgtaaacatcggattatcccttttctccctat 41966312  T

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Target: scaffold0667 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 5373 - 5185
Alignment:
Q  24 ttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcc 123  Q
    ||||||| | |||| || ||||||||||| ||||| || ||||||||| ||||| |||||||||| || ||||||||||| ||||||| | |||||| ||    
T  5373 ttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattccc 5274  T
Q  124 tcaatcgttccttaatccttcgacacaactttgatttctaccaaatc---gatgatttctctaacctaaccaccggcgttaaactcaac 209  Q
    ||||| | ||||| |||||||||| ||  |   || |||||||||||   ||||||||||| ||||| ||||||| ||||  |||||||    
T  5273 tcaatagatccttcatccttcgactcagatccaatatctaccaaatcgaagatgatttctcaaacctcaccaccgccgttccactcaac 5185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 5066 - 5020
Alignment:
Q  298 tctggaaccctaacatccgtaaacaccggattatcccttttccccct 344  Q
    ||||||||||||||||||||||||| |  ||||||||||||| ||||    
T  5066 tctggaaccctaacatccgtaaacatcacattatcccttttctccct 5020  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 26575775 - 26575650
Alignment:
Q  42 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatcc 141  Q
    ||||||||||| ||||| || ||||||||| ||| | ||||||||||| | || |||||||| |||||||||  ||||| || |||||| ||||||||||    
T  26575775 ctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattcccccaatcgatccttaatcc 26575676  T
Q  142 ttcgacacaactttgatttctaccaa 167  Q
    |||||  ||| || ||| ||||||||    
T  26575675 ttcgattcaaattcgatatctaccaa 26575650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 322
Target Start/End: Complemental strand, 561817 - 561789
Alignment:
Q  294 gctttctggaaccctaacatccgtaaaca 322  Q
    |||||||||||||||||||||||||||||    
T  561817 gctttctggaaccctaacatccgtaaaca 561789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 37463418 - 37463293
Alignment:
Q  42 ctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatcc 141  Q
    ||||||||||| ||||| || ||||||||| ||||  |||||||||| || ||||||||||| ||||| ||| |||||  ||||||||  ||| |||||     
T  37463418 ctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatca 37463319  T
Q  142 ttcgacacaactttgatttctaccaa 167  Q
    ||||| ||||||  ||| ||||||||    
T  37463318 ttcgaaacaactccgatatctaccaa 37463293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 37463087 - 37463037
Alignment:
Q  298 tctggaaccctaacatccgtaaacaccggattatcccttttccccctatgc 348  Q
    |||||||||||||||  |||||||| | |||||||||||||| ||||||||    
T  37463087 tctggaaccctaacacacgtaaacatctgattatcccttttctccctatgc 37463037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 36225655 - 36225575
Alignment:
Q  33 caatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctc 113  Q
    |||||||||||||||||||| ||||| || ||||||||| ||||  |||||||||| || |||||||  || |||||||||    
T  36225655 caatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttcacctc 36225575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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