View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_36 (Length: 352)
Name: NF9388_low_36
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 6359437 - 6359103
Alignment:
| Q |
1 |
tttgagtgactggtgtgtgctgatgacaatcacaatgatggtgccaacaacgaaggtattgctgctggtgttgttggaggcagctgatgtacaatgatta |
100 |
Q |
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| T |
6359437 |
tttgagtgactggtgtgtgctgatgacaatcacaatgatggtgccaacaacgaaggtattgctgctggtgttgttggaggcagctgatgtacaacgatta |
6359338 |
T |
|
| Q |
101 |
tgagtggaaaaacgaagggattaggttattggatcgagatttctgtaaagcttgaaggtatcaaacaatatatttaataacgaaataataacagtagtag |
200 |
Q |
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| T |
6359337 |
tgagtggaaaaacgaagggattaggttattggatcgagatttctgtaatgcttgaaggtatcaaacaatatatttaataacgaaataataacagtagtaa |
6359238 |
T |
|
| Q |
201 |
atagagagaattacaaggacgagcttaaattcaaaatgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatggatatagctt |
300 |
Q |
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| T |
6359237 |
atagagagaattacaaggacgagcttaaattcaaaacgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatggatatagctt |
6359138 |
T |
|
| Q |
301 |
cttgataatctgcatatactcaaggatctgacttc |
335 |
Q |
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| T |
6359137 |
cttgataatctgcatatactcaaggatctgacttc |
6359103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 32857285 - 32857358
Alignment:
| Q |
262 |
tttgcagtttctcaatccttttatatatggatatagcttcttgataatctgcatatactcaaggatctgacttc |
335 |
Q |
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| T |
32857285 |
tttgcagtttctcaatcattttatggatggaaatagcttcatgagaatctacatatagtcaaggatttgacttc |
32857358 |
T |
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