View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_39 (Length: 349)
Name: NF9388_low_39
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 7971181 - 7970852
Alignment:
| Q |
1 |
cgaccgtcccactccaacccattcatttcacacgtttcattcattcttatattattatagttttgggtgggtcaggttttggattttcatcgttcttatt |
100 |
Q |
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| T |
7971181 |
cgaccgtcccactccaacccattcatttcacacgtttcattcattcttatattattatagttttgggtgggtcaggttttggattttcatcgttcttatt |
7971082 |
T |
|
| Q |
101 |
cctatataagatactctcaactcaacttcaattcaagtaccaatggcatcaacatcatcttcaaccacattctgcaacctcaagtttcactccacacgac |
200 |
Q |
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| T |
7971081 |
cctatataagatactctcaactcaacttcaattcaagtaccaatggcatcaacatcatcttcaaccacattctgcaacctcaagtttcactccacacgac |
7970982 |
T |
|
| Q |
201 |
ccaacaacaacaatgcttcctttcttcctcgcattcttcacatgaaacaggaggaggaggacaacaacaccaaccaaatcaatcgaagacaactcatatt |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7970981 |
ccaacaacaacaatgtttcctttcttcctcgcattcttcacatgaaacaggaggaggaggacaacaacaccaaccaaatcaatcgaagacaactcatatt |
7970882 |
T |
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| Q |
301 |
gaggaccagtgaaatagcaaccattggtgc |
330 |
Q |
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||||| ||||||||||||||| |||||||| |
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| T |
7970881 |
gaggagcagtgaaatagcaacgattggtgc |
7970852 |
T |
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