View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388_low_4 (Length: 601)

Name: NF9388_low_4
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388_low_4
NF9388_low_4
[»] chr8 (2 HSPs)
chr8 (4-491)||(12401068-12401553)
chr8 (556-592)||(12401618-12401654)
[»] chr7 (1 HSPs)
chr7 (408-449)||(24966009-24966050)
[»] chr1 (4 HSPs)
chr1 (408-449)||(10663118-10663159)
chr1 (417-455)||(31625963-31626001)
chr1 (408-456)||(38221482-38221530)
chr1 (416-452)||(40188831-40188867)
[»] chr6 (1 HSPs)
chr6 (416-455)||(9024045-9024084)
[»] chr2 (1 HSPs)
chr2 (408-455)||(36159456-36159503)
[»] chr4 (1 HSPs)
chr4 (360-396)||(24001565-24001601)


Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 4 - 491
Target Start/End: Original strand, 12401068 - 12401553
Alignment:
Q  4 actaatccttggaggaattgaagttagtctctttggccactttgatatttctccaccagcaacttctttgacgttgtttacatctggcagtggggtcaag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12401068 actaatccttggaggaattgaagttagtctctttggccactttgatatttctccaccagcaacttctttgacgttgtttacatctggcagtggggtcaag 12401167  T
Q  104 caggtatctagtttagtgtacctgcaatgaaaaaggttgatgtaataaacaatttaaagaaaaatgtacatatgttagaacttaactcgatcatacaaaa 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12401168 caggtatctagtttagtgtacctgcaatcaaaaaggttgatgtaataaacaatttaaagaaaaatgtacatctgttagaacttaactcgatcatacaaaa 12401267  T
Q  204 ccgactaataagatgagagatgtttatcacttataaacacattattcaagccatatccgcatcaaatgtgggattttcaatattatttcctcatgcctaa 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| || |||| |  |||||||||||    
T  12401268 ccgactaataagatgagagatgtttatcacttataaacacattattcaggccatat-cgcatcaaatgtgggattttgaacatta-tcactcatgcctaa 12401365  T
Q  304 gactggacatctggagcgtaacttgactgacctgatagcggatggaccaacaaattttggatagactctcatactatctcagaatttgggttgagttaaa 403  Q
    |||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12401366 gactagacatctggagcgtagcttgactgacctgatagcggatggtccaacaaattttggatagactctcaaactatctcagaatttgggttgagttaaa 12401465  T
Q  404 agttaaaaccaacttgtaaggtaagagatgtctcccacttataaacacatttcacacaatattcaatcgaatgcgatactcttaaccg 491  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12401466 agttaaaaccaacttgtaaggtaagagatgtctctcacttataaacacatttcacacaatattcaatccaatgcgatactcttaaccg 12401553  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 556 - 592
Target Start/End: Original strand, 12401618 - 12401654
Alignment:
Q  556 gtgttattaccaagccatatctggatcctatgcttct 592  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12401618 gtgttattaccaagccatatctggatcctgtgcttct 12401654  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 24966009 - 24966050
Alignment:
Q  408 aaaaccaacttgtaaggtaagagatgtctcccacttataaac 449  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  24966009 aaaaccaacgtgtaaggtgagagatgtctcccacttataaac 24966050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 10663159 - 10663118
Alignment:
Q  408 aaaaccaacttgtaaggtaagagatgtctcccacttataaac 449  Q
    |||||||||||||||||| ||| |||||||||||||||||||    
T  10663159 aaaaccaacttgtaaggtgagaaatgtctcccacttataaac 10663118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 455
Target Start/End: Original strand, 31625963 - 31626001
Alignment:
Q  417 ttgtaaggtaagagatgtctcccacttataaacacattt 455  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  31625963 ttgtaaggtgagagatgcctcccacttataaacacattt 31626001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 38221530 - 38221482
Alignment:
Q  408 aaaaccaacttgtaaggtaagagatgtctcccacttataaacacatttc 456  Q
    |||| ||||||||||||| || ||||||||||||||| ||| |||||||    
T  38221530 aaaaacaacttgtaaggtgagggatgtctcccacttaaaaatacatttc 38221482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 416 - 452
Target Start/End: Complemental strand, 40188867 - 40188831
Alignment:
Q  416 cttgtaaggtaagagatgtctcccacttataaacaca 452  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  40188867 cttgtaaggtaagagatgcctcccacttataagcaca 40188831  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 455
Target Start/End: Complemental strand, 9024084 - 9024045
Alignment:
Q  416 cttgtaaggtaagagatgtctcccacttataaacacattt 455  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  9024084 cttgtaagggaagagatgtctcgcacttataaacacattt 9024045  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 455
Target Start/End: Complemental strand, 36159503 - 36159456
Alignment:
Q  408 aaaaccaacttgtaaggtaagagatgtctcccacttataaacacattt 455  Q
    |||||| ||||||||||| |||||||||||| || |||||||||||||    
T  36159503 aaaaccgacttgtaaggtgagagatgtctcctacgtataaacacattt 36159456  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 360 - 396
Target Start/End: Complemental strand, 24001601 - 24001565
Alignment:
Q  360 ttggatagactctcatactatctcagaatttgggttg 396  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  24001601 ttggatagactctgatactatcttagaatttgggttg 24001565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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