View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9388_low_41 (Length: 342)
Name: NF9388_low_41
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 52549229 - 52549293
Alignment:
| Q |
269 |
ttaaaataggaatacaatcatacaaatatatttaaatcacatttccttgcctgagacagaattat |
333 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52549229 |
ttaaaataggaatacaattatacaaatatatttaaatcacatttccttgcctgagacagaattat |
52549293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 52549112 - 52549164
Alignment:
| Q |
152 |
attatgatcattattgctgcaataatgtaattggccagcttaaacctttctag |
204 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52549112 |
attatgatcattattactgcaataatgtaattggccagcttaaacctttctag |
52549164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 5230428 - 5230326
Alignment:
| Q |
18 |
caccagtatctaaacttacagccatttgagcaaaccatttggtataagcttttccaggagcaccaatttcccactccactggtccatactcattttctat |
117 |
Q |
| |
|
|||||||||||| || |||||||||||||||| |||||| || ||||| ||||||||||||||||||||||| ||||| |||||||||||||| || || |
|
|
| T |
5230428 |
caccagtatctagacctacagccatttgagcagcccattttgtgtaagcctttccaggagcaccaatttcccattccacaggtccatactcattctcaat |
5230329 |
T |
|
| Q |
118 |
cta |
120 |
Q |
| |
|
||| |
|
|
| T |
5230328 |
cta |
5230326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 17125478 - 17125401
Alignment:
| Q |
34 |
tacagccatttgagcaaaccatttggtataagcttttccaggagcaccaatttcccactccactggtccatactcatt |
111 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
17125478 |
tacagccatttgagaaaaccatttggtgtaagattttccaggtgcaccaatttcccattccactggtccatactcatt |
17125401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 42989374 - 42989443
Alignment:
| Q |
52 |
ccatttggtataagcttttccaggagcaccaatttcccactccactggtccatactcattttctatctac |
121 |
Q |
| |
|
||||||||| || | ||| ||||||||||||||||| |||||| |||||||| |||||||| |||||| |
|
|
| T |
42989374 |
ccatttggtgtaggatttaccaggagcaccaatttcatactccataggtccatattcattttcaatctac |
42989443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University