View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9388_low_42 (Length: 338)
Name: NF9388_low_42
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_42 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 45930162 - 45929840
Alignment:
| Q |
16 |
tgttcaagccagtcagtttttatggatactttatcatcgtgaaagacatggctgcttcttttcaggattgctgcaattgtataccccaaggccatcagcc |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45930162 |
tgttcgagccagtcagtttttatggatactttatcatcgtgaaagacatggctgcttcttttcaggattgctgcaattgtataccccaaggccatcagcc |
45930063 |
T |
|
| Q |
116 |
ctccaagaagacgcacactgacctcaaaagtaattctaggtgatataatgaatggactatccgtaacccattcctgaaaacaataaatcaatatagggat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45930062 |
ctccaagaagacgcacactgacctcaaaagtaattctaggtgatataatgaatggactatccgtaacccattcctgaaaacaataaatcaatatagggat |
45929963 |
T |
|
| Q |
216 |
tttccagtgattttgctgtaattgcaaactttctgcaaatctcagacatgtgaaggtaggctagctaatgataggatctgcaaagcccatattttctaag |
315 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45929962 |
tttccagtgattttgctgtaagtgcaaactttctgcaaatctcagacatgtgaaggtaggctagctaatgatacgatctgcaaagcccatattttctaag |
45929863 |
T |
|
| Q |
316 |
ctgcaatttcaatagtatcctcc |
338 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
45929862 |
ctgcaatttcaatagtatcctcc |
45929840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 195
Target Start/End: Complemental strand, 28076238 - 28076100
Alignment:
| Q |
57 |
aaagacatggctgcttcttttcaggattgctgcaattgtataccccaaggccatcagccctccaagaagacgcacactgacctcaaaagtaattctaggt |
156 |
Q |
| |
|
||||||||| ||| |||| || ||||| | || || ||||| ||||||||||| || || ||||| || |||||||||||||||||||||||||| ||| |
|
|
| T |
28076238 |
aaagacatgactgtttctcttaaggatagtagctatcgtatatcccaaggccattagtccaccaaggaggcgcacactgacctcaaaagtaattctcggt |
28076139 |
T |
|
| Q |
157 |
gatataatgaatggactatccgtaacccattcctgaaaa |
195 |
Q |
| |
|
||||| | || |||||||| || ||||||||||||||| |
|
|
| T |
28076138 |
gatatgacaaagggactatctgtcacccattcctgaaaa |
28076100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 29536945 - 29536842
Alignment:
| Q |
58 |
aagacatggctgcttcttttcaggattgctgcaattgtataccccaaggccatcagccctccaagaagacgcacactgacctcaaaagtaattctaggtg |
157 |
Q |
| |
|
||||||||||| |||||||| || || | ||| ||||| || || | ||||||||| || ||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
29536945 |
aagacatggctacttcttttaagaatagttgctattgtgtatccaagggccatcagtccaccaagaagacgcacactgaccgcaaaagtaattctcggtg |
29536846 |
T |
|
| Q |
158 |
atat |
161 |
Q |
| |
|
|||| |
|
|
| T |
29536845 |
atat |
29536842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University