View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_43 (Length: 338)
Name: NF9388_low_43
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_43 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 45930162 - 45929840
Alignment:
| Q |
16 |
tgttcaagccagtcagtttttatggatactttatcatcgtgaaagacatggctgcttcttttcaggattgctgcaattgtataccccaaggccatcagcc |
115 |
Q |
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| T |
45930162 |
tgttcgagccagtcagtttttatggatactttatcatcgtgaaagacatggctgcttcttttcaggattgctgcaattgtataccccaaggccatcagcc |
45930063 |
T |
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| Q |
116 |
ctccaagaagacgcacactgacctcaaaagtaattctaggtgatataatgaatggactatccgtaacccattcctgaaaacaataaatcaatatagggat |
215 |
Q |
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| T |
45930062 |
ctccaagaagacgcacactgacctcaaaagtaattctaggtgatataatgaatggactatccgtaacccattcctgaaaacaataaatcaatatagggat |
45929963 |
T |
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| Q |
216 |
tttccagtgattttgctgtaattgcaaactttctgcaaatctcagacatgtgaaggtaggctagctaatgataggatctgcaaagcccatattttctaag |
315 |
Q |
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| T |
45929962 |
tttccagtgattttgctgtaagtgcaaactttctgcaaatctcagacatgtgaaggtaggctagctaatgatacgatctgcaaagcccatattttctaag |
45929863 |
T |
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| Q |
316 |
ctgcaatttcaatagtatcctcc |
338 |
Q |
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| T |
45929862 |
ctgcaatttcaatagtatcctcc |
45929840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 195
Target Start/End: Complemental strand, 28076238 - 28076100
Alignment:
| Q |
57 |
aaagacatggctgcttcttttcaggattgctgcaattgtataccccaaggccatcagccctccaagaagacgcacactgacctcaaaagtaattctaggt |
156 |
Q |
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| T |
28076238 |
aaagacatgactgtttctcttaaggatagtagctatcgtatatcccaaggccattagtccaccaaggaggcgcacactgacctcaaaagtaattctcggt |
28076139 |
T |
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| Q |
157 |
gatataatgaatggactatccgtaacccattcctgaaaa |
195 |
Q |
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| T |
28076138 |
gatatgacaaagggactatctgtcacccattcctgaaaa |
28076100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 29536945 - 29536842
Alignment:
| Q |
58 |
aagacatggctgcttcttttcaggattgctgcaattgtataccccaaggccatcagccctccaagaagacgcacactgacctcaaaagtaattctaggtg |
157 |
Q |
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| T |
29536945 |
aagacatggctacttcttttaagaatagttgctattgtgtatccaagggccatcagtccaccaagaagacgcacactgaccgcaaaagtaattctcggtg |
29536846 |
T |
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| Q |
158 |
atat |
161 |
Q |
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|||| |
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| T |
29536845 |
atat |
29536842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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