View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388_low_45 (Length: 334)

Name: NF9388_low_45
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388_low_45
NF9388_low_45
[»] chr2 (3 HSPs)
chr2 (16-324)||(4111449-4111757)
chr2 (84-276)||(28579934-28580128)
chr2 (123-278)||(27556087-27556245)
[»] chr3 (2 HSPs)
chr3 (50-278)||(5699530-5699760)
chr3 (182-278)||(6075476-6075575)
[»] chr7 (4 HSPs)
chr7 (91-278)||(11898102-11898293)
chr7 (123-276)||(5712860-5713014)
chr7 (84-159)||(24469513-24469588)
chr7 (84-159)||(24474461-24474536)
[»] chr8 (3 HSPs)
chr8 (152-281)||(15663234-15663366)
chr8 (109-276)||(15551119-15551290)
chr8 (109-254)||(22502399-22502547)
[»] chr4 (3 HSPs)
chr4 (182-276)||(18448525-18448622)
chr4 (195-278)||(11476179-11476263)
chr4 (131-281)||(20880795-20880945)
[»] chr1 (1 HSPs)
chr1 (46-126)||(25234375-25234453)
[»] chr5 (1 HSPs)
chr5 (123-268)||(19079922-19080069)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 4111449 - 4111757
Alignment:
Q  16 attatgacgtttcaagagtttctatttttcatttacttttggattatgctgagaacttgttgttgatatatttatgagatttgagacatgttgttgagat 115  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4111449 attatgacgtgtcaatagtttctatttttcatttacttttggattatggtgagaacttgttgttgatatatttatgagatttgagacatgttgttgagat 4111548  T
Q  116 tatggattatctgatatatatgagatattgtttgtattccgctgcgagattttataaatctgaatgatgcatgtttttgaaaatgatgacgtaacatctt 215  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  4111549 tatggattatctgatatatataagatattgtttgtattccgctgcgagattttataaatccgaattatgcatgtttttgaaaatgatgacgtaacatctt 4111648  T
Q  216 gaaccttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttacagtgcaaagtgaaggcaagcagcaagatgactttcatc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  4111649 gaaccttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaccgtgcaaggtgaaggcaaggagcaagatgactttcatc 4111748  T
Q  316 ctccctttg 324  Q
    ||| |||||    
T  4111749 ctctctttg 4111757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 84 - 276
Target Start/End: Original strand, 28579934 - 28580128
Alignment:
Q  84 tatttatgagatttgagacatgttgttgagattatggat-tatctgatatatatgagatattgtttgtattccgctgcgagattttataaatctgaatga 182  Q
    ||||||||||||||||||| ||||||||| ||| ||||| ||||||| |||| ||||||  ||||| |||| || ||||||||||   ||| |  ||| |    
T  28579934 tatttatgagatttgagacttgttgttgatattctggatgtatctgagatatttgagatgctgtttttatttcgttgcgagatttatgaaaaccaaatta 28580033  T
Q  183 tgcatgttttt-gaaaatgatgacgtaacatcttgaaccttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaaggatgtta 276  Q
    ||||||||||  ||||||||||||||| ||||||||||  ||| || ||| || |||||||||||| ||||||  || |||||||||||| |||||    
T  28580034 tgcatgttttaagaaaatgatgacgtatcatcttgaactcttt-aattaaatgatttatttgcattaaatattacttttggggttcaagggtgtta 28580128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 278
Target Start/End: Complemental strand, 27556245 - 27556087
Alignment:
Q  123 tatctgatatatatgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt--gaaaatgatgacgtaacatcttgaac 219  Q
    ||||||| |||| |||||| |||||| |||||||||||||| |||||| ||| | |||| ||||||||||||  |||||| ||||||| |||||||||||    
T  27556245 tatctgagatatttgagatgttgtttttattccgctgcgag-ttttatgaaaaccgaattatgcatgtttttgagaaaattatgacgtgacatcttgaac 27556147  T
Q  220 -cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaca 278  Q
     |||||||   |||  |||| ||||||| | ||||| || |||||| ||||| |||||||    
T  27556146 tcttttgattaaatgatttagttgcattaattattgcttctggggtacaagggtgttaca 27556087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 50 - 278
Target Start/End: Original strand, 5699530 - 5699760
Alignment:
Q  50 acttttggattatgctgagaact-tgttgttgatatatttatgagatttgagacatgttgttgagattatggattatctgatatatatgagatattgttt 148  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |  |  ||||||||| || |||| |||||| ||||||    
T  5699530 acttttggattatgctgagaactctgttgttgatgtatatatgagatttgagacatgttgttcatgtc-tggattatcggagatatttgagatgttgttt 5699628  T
Q  149 gtattccgctgcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaaccttttgaaataattgtttatttgcatt 246  Q
     ||||||||| | || |||||| |||||  ||| |||||||||||  ||||||||||  ||| |||||||||| || |||||||| ||||||||||||||    
T  5699629 ttattccgctacaagtttttatgaaatccaaattatgcatgttttgagaaaatgatggagtagcatcttgaacattatgaaataactgtttatttgcatt 5699728  T
Q  247 taatattgtttgtggggttcaaggatgttaca 278  Q
     |||||||||||| ||||||||||||||||||    
T  5699729 aaatattgtttgtagggttcaaggatgttaca 5699760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 6075575 - 6075476
Alignment:
Q  182 atgcatgtttttga--aaatgatgacgtaacatcttgaaccttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaaggatgttaca 278  Q
    ||||||||||||||  ||||||| |||||||||||||||   ||| || ||| || |||||||||||| |||||| |||||||||||||| | |||||||    
T  6075575 atgcatgtttttgagaaaatgataacgtaacatcttgaattcttttaattaaatgatttatttgcattaaatattttttgtggggttcaacggtgttaca 6075476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 91 - 278
Target Start/End: Complemental strand, 11898293 - 11898102
Alignment:
Q  91 gagatttgagacatgttgttgagattatggatt-atctgatatatat-gagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcat 187  Q
    |||||| ||||| ||||||||||| |||||||| ||| || || | | |||||||||||| |||||||||||||| |||||| ||| ||||||  |||||    
T  11898293 gagattggagacttgttgttgagaatatggattcatccgaaatgttttgagatattgtttttattccgctgcgag-ttttatgaaaactgaattctgcat 11898195  T
Q  188 gtttttga-aaatgatgacgtaacatcttgaa-ccttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaca 278  Q
    ||||||||    |||| ||||||||||||||| |||||| ||||||||||||||| ||||| ||||||  ||||||||||||||| |||||||    
T  11898194 gtttttgagttttgataacgtaacatcttgaatcctttttaaataattgtttattagcattaaatatttcttgtggggttcaagggtgttaca 11898102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 276
Target Start/End: Original strand, 5712860 - 5713014
Alignment:
Q  123 tatctgatatatatgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaac- 219  Q
    ||||||| |||| |||||| |||||| |||| |||| |||| |||||| ||| |||||| |||||||||||  |||||||| ||| ||||||||||||      
T  5712860 tatctgagatatttgagatgttgttt-tatttcgctacgag-ttttatgaaaactgaattatgcatgttttgagaaaatgaagacataacatcttgaatt 5712957  T
Q  220 cttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaaggatgtta 276  Q
    |||||||| |||||| |||||||||||| ||||||| ||||||||||||||| |||||    
T  5712958 cttttgaa-taattgatttatttgcattaaatattgcttgtggggttcaagggtgtta 5713014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 24469513 - 24469588
Alignment:
Q  84 tatttatgagatttgagacatgttgttgagattatggat-tatctgatatatatgagatattgtttgtattccgctg 159  Q
    |||||| |||||||||||| ||||||||||||| | ||| ||||||| |||| |||||| |||||| ||||||||||    
T  24469513 tatttaagagatttgagacttgttgttgagattctagatgtatctgaaatatttgagatgttgttt-tattccgctg 24469588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 24474461 - 24474536
Alignment:
Q  84 tatttatgagatttgagacatgttgttgagattatggat-tatctgatatatatgagatattgtttgtattccgctg 159  Q
    |||||| |||||||||||| ||||||||||||| | ||| ||||||| |||| |||||| |||||| ||||||||||    
T  24474461 tatttaagagatttgagacttgttgttgagattctagatgtatctgaaatatttgagatgttgttt-tattccgctg 24474536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 152 - 281
Target Start/End: Original strand, 15663234 - 15663366
Alignment:
Q  152 ttccgctgcgagattttataaat-ctgaatgatgcatgtttttga--aaatgatgacgtaacatcttgaac-cttttgaaataattgtttatttgcattt 247  Q
    |||||||||||| |||||||||  |||||| ||||||||||||||  |||||||||||||||||||| ||| |||||||   ||   ||||||||||||     
T  15663234 ttccgctgcgag-ttttataaaaactgaattatgcatgtttttgagaaaatgatgacgtaacatcttaaactcttttgattaaacgatttatttgcatta 15663332  T
Q  248 aatattgtttgtggggttcaaggatgttacagtg 281  Q
    |||||||||||| |||||||||| ||||| ||||    
T  15663333 aatattgtttgtagggttcaagggtgttatagtg 15663366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 276
Target Start/End: Original strand, 15551119 - 15551290
Alignment:
Q  109 ttgagattatggat-tatctgatatatatgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgac 205  Q
    |||||||| ||||| |||| || |||| | ||||||||||| ||||||||| |||| |||||| ||| | | || |||||||||||  ||||||||||||    
T  15551119 ttgagattctggatgtatccgagatatttcagatattgtttttattccgctacgag-ttttatgaaaacaggattatgcatgttttgagaaaatgatgac 15551217  T
Q  206 gtaacatcttgaac-cttttgaaataattgtttatttgcatttaatattgtttgt-ggggttcaaggatgtta 276  Q
    |||||||||||||| |||||||   |||  |||||||||||| ||||||| |||| ||||||||||| |||||    
T  15551218 gtaacatcttgaactcttttgattaaatgatttatttgcattaaatattgcttgtgggggttcaagggtgtta 15551290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 254
Target Start/End: Original strand, 22502399 - 22502547
Alignment:
Q  109 ttgagattatggat-tatctgatatatatgagatattgtttgtattccgctgcgagattttataaatctgaatgatgcatgtttt----tgaaaatgatg 203  Q
    |||||||| ||||| ||||||| |||| |||||| |||||| ||||||||||| || || |  |||| |||||||||||||||||      ||||| |||    
T  22502399 ttgagattctggatgtatctgagatatttgagatgttgtttttattccgctgctagtttatgaaaat-tgaatgatgcatgttttgagaaaaaaataatg 22502497  T
Q  204 acgtaacatcttgaaccttttgaaataattgtttatttgcatttaatattg 254  Q
    || |||||||||||| || ||||   |||  ||||||||||||||||||||    
T  22502498 acataacatcttgaa-ctcttgattaaataatttatttgcatttaatattg 22502547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 18448622 - 18448525
Alignment:
Q  182 atgcatgtttttga--aaatgatgacgtaacatcttgaac-cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgtta 276  Q
    ||||||||||||||  ||||||||||||| |||||||||| |||||||   |||  |||||||||||| |||| || ||||||||||||||| |||||    
T  18448622 atgcatgtttttgagaaaatgatgacgtagcatcttgaactcttttgattaaatgatttatttgcattaaatactgcttgtggggttcaagggtgtta 18448525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 11476263 - 11476179
Alignment:
Q  195 aaaatgatgacgtaacatcttgaac-cttttgaaataattgtttatttgcatttaatattgtttgtggggttcaaggatgttaca 278  Q
    ||||||||||||| ||||||||||| |||||||    ||  |||||||||||| |||||||||||||| |||||||| |||||||    
T  11476263 aaaatgatgacgtgacatcttgaactcttttgattagatgatttatttgcattaaatattgtttgtggagttcaagggtgttaca 11476179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 281
Target Start/End: Complemental strand, 20880945 - 20880795
Alignment:
Q  131 atatatgagatattgtttgtattccgctgcgagattttataaatctgaatgatgcatgtttttgaaaatgatgacgtaacatcttgaac-cttttgaaat 229  Q
    |||| |||||| |||||| ||||||| ||| ||||||   ||| | |||| |||||||||||||| ||  |||||||||| |||||||  |||||||       
T  20880945 atatttgagatgttgtttttattccgatgcaagatttatgaaaaccgaattatgcatgtttttgagaaa-atgacgtaacgtcttgaattcttttgatta 20880847  T
Q  230 aattgtttatttgcatttaatattgtttgtggggttcaaggatgttacagtg 281  Q
    |||  ||||||||||||  |||||  ||||||||||||||| ||||||||||    
T  20880846 aatgatttatttgcattacatatttcttgtggggttcaagggtgttacagtg 20880795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 25234453 - 25234375
Alignment:
Q  46 atttacttttggattatgctgagaactt-gttgttgatatatttatgagatttgagacatgttgttgagattatggattatc 126  Q
    |||||||||||||||||| |||| |||| |||| |||| ||||| |||||||||| ||   |||||||||||||||||||||    
T  25234453 atttacttttggattatgttgagtactttgttgatgatgtatttttgagatttgaaac---ttgttgagattatggattatc 25234375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 268
Target Start/End: Original strand, 19079922 - 19080069
Alignment:
Q  123 tatctgatatatatgagatattgtttgtattccgctgcgagattttat-aaatctgaatgatgcatgttttt-gaaaatgatgacgtaacatcttgaac- 219  Q
    ||||||| |||  |||||| ||| || |||||||||| ||| |||||| ||| |||||| || ||| ||||  ||||||||||| ||||||||||||||     
T  19079922 tatctgagatacttgagatgttgcttttattccgctgtgag-ttttatgaaaactgaattatacatattttaagaaaatgatgatgtaacatcttgaact 19080020  T
Q  220 cttttgaaataattg-tttatttgcatttaatattgtttgtggggttcaa 268  Q
    |||||| | |||||| |  ||||||||| |||||| ||||||||||||||    
T  19080021 cttttg-attaattgatgaatttgcattaaatattatttgtggggttcaa 19080069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University