View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_5 (Length: 546)
Name: NF9388_low_5
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 191 - 538
Target Start/End: Original strand, 24027723 - 24028074
Alignment:
| Q |
191 |
ctctcaagtgcttattggtatgtctttcctttacataaaccatggaaataaggctgcaaaccccaatgaaaaaggtagaaatctttgaacacaacatgct |
290 |
Q |
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| T |
24027723 |
ctctcaagtgcttattggtatgtctttcctttacataaaccatggaaataaggctgtaaaccctaatgaaaaaggtagaaatctttgaacacaacatgct |
24027822 |
T |
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| Q |
291 |
atataaagattaattaacaaacaaaaccatgcagcatgaaaaacat----gtagtacaaaatagttcaaatcttaagtgtagctgagtcggatcgttgat |
386 |
Q |
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| T |
24027823 |
atataaagattaattaataaacaaaaccatgcagcatgaaaaacatatatgtagtacaaaatagttcaaatcttaagtgtagccgagtcggatcgttgat |
24027922 |
T |
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| Q |
387 |
cttccccatttgcaacagcaatagcacgcgatctcgcgacaaagaatcccaatgaatgaccaagaacagcagctataaagattccaacattgaaagacat |
486 |
Q |
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| T |
24027923 |
cttccccatttgcaacagcaatagcacgtgatctcgcgacaaagaatcccaatgaatgaccaagaacagcagctataaagattccaacattgaaagacat |
24028022 |
T |
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| Q |
487 |
aacagcaagcataagcaagtaaatgaaaccgatacgaaagaagtaaacacca |
538 |
Q |
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| T |
24028023 |
aacagcaagcataagcaagtaaatgaaactgatacgaaagaagtaaacacca |
24028074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 24027509 - 24027682
Alignment:
| Q |
16 |
taaaacttttggtggtgtcatggcacctccctaacataaaacaaatccacccgaccacgctgcatatctctcaatcattgtattaatctaacgtctacaa |
115 |
Q |
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| T |
24027509 |
taaaaattttggtggtgtcatggcacctccctaacataaaacaaatccacccgaccacactgcatatctctcaatcattgtattaatctaacgtctacaa |
24027608 |
T |
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| Q |
116 |
atattgatttataccaatcattagattaatctaacgattgagaattcactcgaaagaccacacatgacagcatga |
190 |
Q |
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| T |
24027609 |
atattgatttataccgatcattagattaatctaacgattgagaattcactcgaaaga-cacacatgacagcatga |
24027682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 442 - 531
Target Start/End: Original strand, 6325516 - 6325605
Alignment:
| Q |
442 |
atgaccaagaacagcagctataaagattccaacattgaaagacataacagcaagcataagcaagtaaatgaaaccgatacgaaagaagta |
531 |
Q |
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| T |
6325516 |
atgaccaacaacagcagcaatgaagattcctatattgaaagacataacagcaagcataaccaagtaaaggaaactaatacgaaaaaagta |
6325605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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