View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_52 (Length: 302)
Name: NF9388_low_52
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 10576267 - 10576553
Alignment:
| Q |
1 |
caaagacttccacttctacagcctctgcttccatattccggcgagnnnnnnn-ccaccaatgttcaacctcttatgacaaaatgaaagcaccaaaggaat |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10576267 |
caaagacttccacttctacagcctctgcttccatattccggcgagttttttttccaccaatgttcaacctcttctgacaaaatgaaagcaccaaaggaat |
10576366 |
T |
|
| Q |
100 |
aacagaagatcttagtgtacaaaatgcgcaaaaggtgcagaatgttcaaaattttgaaggaaaaggaataacagaggagaggagaaaagagttcttgtca |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10576367 |
aacagaagatcttagtgtacaaaatgcgcaaaaggtgcagaatgttcagaattttgaaggaaaaggaataacagaggagaggagaaaagagttcttgtca |
10576466 |
T |
|
| Q |
200 |
caattcatgcatcctcatatatgcacccaattcaagtcacaaagcctctcaattgagagttagttagcctctggggaccctttgatgt |
287 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10576467 |
caattcatgcatcctcatatatgcacccaattcaagtcacaaagcctctcaattgagagttagttagcctct-gggaccctttgatgt |
10576553 |
T |
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