View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388_low_55 (Length: 297)

Name: NF9388_low_55
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388_low_55
NF9388_low_55
[»] chr4 (5 HSPs)
chr4 (54-281)||(51213101-51213328)
chr4 (54-281)||(51157125-51157352)
chr4 (54-281)||(51146003-51146230)
chr4 (81-281)||(29936847-29937047)
chr4 (70-281)||(51199939-51200150)
[»] chr3 (2 HSPs)
chr3 (54-281)||(49736719-49736946)
chr3 (54-281)||(36286310-36286537)
[»] chr1 (2 HSPs)
chr1 (158-270)||(38525248-38525360)
chr1 (170-270)||(38566397-38566497)
[»] chr2 (1 HSPs)
chr2 (206-281)||(5823519-5823594)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 54 - 281
Target Start/End: Complemental strand, 51213328 - 51213101
Alignment:
Q  54 tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51213328 tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat 51213229  T
Q  154 cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatcaaggagtagaattcttggatctttcagaatt 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51213228 cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatcaaggagtagaattcttggatctttcagaatt 51213129  T
Q  254 gctcttgctatagcaattctttgctttt 281  Q
    ||||||||||||||||||||||||||||    
T  51213128 gctcttgctatagcaattctttgctttt 51213101  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 54 - 281
Target Start/End: Complemental strand, 51157352 - 51157125
Alignment:
Q  54 tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat 153  Q
    ||||| |||| |||| |||||| |  ||||| ||||||||| | ||| | || |||||||| |||| |||||||||||||| ||| ||||| ||||||||    
T  51157352 tacctctttcaactatttttccatgatgaatgacagcaatggtttcaacatttcttattgtacttaagcggtgagctacaacgatagttgtccggtttat 51157253  T
Q  154 cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatcaaggagtagaattcttggatctttcagaatt 253  Q
    ||| ||||| ||||  | ||||||||| | ||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| || ||||||| ||||    
T  51157252 cattattctctccaatgcctcttgtacaattctctcagattctgcatcaagggcacttgtagcttcatcaagaagtaggattctcgggtctttcaaaatt 51157153  T
Q  254 gctcttgctatagcaattctttgctttt 281  Q
    |||||||| || |||| |||||||||||    
T  51157152 gctcttgcaattgcaactctttgctttt 51157125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 281
Target Start/End: Complemental strand, 51146230 - 51146003
Alignment:
Q  54 tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat 153  Q
    ||||| |||| |||| ||||||||  ||||| ||||||||  ||||| | || ||||| ||||| | |||||| ||||||| ||| || || ||||||||    
T  51146230 tacctctttcaactatttttccttgatgaatgacagcaattgtatcaacatttcttatagtgctcaagcggtgtgctacaacgatagtcgtccggtttat 51146131  T
Q  154 cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatcaaggagtagaattcttggatctttcagaatt 253  Q
    ||| ||||||| ||  | ||||||||| | ||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| ||||    
T  51146130 cattattctgttcaatgcctcttgtacaattctctcagattctgcatcaagggcacttgtagcttcatcaagaagtaggattcttggatctttcaaaatt 51146031  T
Q  254 gctcttgctatagcaattctttgctttt 281  Q
    |||||||| || |||| ||| |||||||    
T  51146030 gctcttgcaattgcaactctctgctttt 51146003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 81 - 281
Target Start/End: Original strand, 29936847 - 29937047
Alignment:
Q  81 gaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttatcataattctgtccagggtctcttgtac 180  Q
    |||| ||||||||| ||||| | || || ||||| |||| |||||||||||| | ||| || || ||||||||||| ||||| ||||  | |||||||||    
T  29936847 gaatgacagcaatggtatcaacatttctgattgtacttaagcggtgagctacgacgattgtcgtccggtttatcattattctttccaatgcctcttgtac 29936946  T
Q  181 tactctttcagattctgcatcaagggcacttgttgcttcatcaaggagtagaattcttggatctttcagaattgctcttgctatagcaattctttgcttt 280  Q
     | ||| |||||||||||||||||||||||||| ||||||||||| ||||  |||||||| ||||||| |||||||||||| || |||| ||||||||||    
T  29936947 aattctctcagattctgcatcaagggcacttgtagcttcatcaagaagtaagattcttgggtctttcaaaattgctcttgcaattgcaactctttgcttt 29937046  T
Q  281 t 281  Q
    |    
T  29937047 t 29937047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 70 - 281
Target Start/End: Complemental strand, 51200150 - 51199939
Alignment:
Q  70 ttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttatcataattctgtccagg 169  Q
    ||||||||  |||||||| |||||| ||||||| ||| ||||||| || |  |||||||||||||| |  ||||||||||||| ||| | ||| ||||      
T  51200150 ttttccttgatgaataacggcaatggtatcagcattctttattgtactcaaacggtgagctacaatcacagttgttcggtttaccattactctatccaat 51200051  T
Q  170 gtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatcaaggagtagaattcttggatctttcagaattgctcttgctatagcaa 269  Q
    | ||||||||| | ||| |||||||| |||||||| |||||||| |||||||| || ||||  |||||||||||||||||||| ||||||||||| ||||    
T  51200050 gcctcttgtacaattctctcagattcagcatcaagcgcacttgtagcttcatcgagaagtaatattcttggatctttcagaatcgctcttgctattgcaa 51199951  T
Q  270 ttctttgctttt 281  Q
     ||| |||||||    
T  51199950 ctctctgctttt 51199939  T

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Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 54 - 281
Target Start/End: Original strand, 49736719 - 49736946
Alignment:
Q  54 tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat 153  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  49736719 tacctttttctactacttttccttggtgaataacggcaatgatatcagcattccttattgtgcttaggcggtgggctacaatgatcattgttcggtttat 49736818  T
Q  154 cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatcaaggagtagaattcttggatctttcagaatt 253  Q
    ||||||||| || || ||||||||||| |||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49736819 cataattctttctagcgtctcttgtaccactctttccgactctgcgtcaagggcacttgttgcttcatctaggagtagaattcttggatctttcagaatt 49736918  T
Q  254 gctcttgctatagcaattctttgctttt 281  Q
    |||||||||||||| |||||||||||||    
T  49736919 gctcttgctatagctattctttgctttt 49736946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 281
Target Start/End: Complemental strand, 36286537 - 36286310
Alignment:
Q  54 tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat 153  Q
    ||||||||||||||| ||||||||  |||||||| || ||  || | || || ||||  || |||| |||||| || ||||| |  || |||| ||||||    
T  36286537 tacctttttctactagttttccttgatgaataacggctatagtagcggcatttcttacagtacttaagcggtgggccacaataacagtagttctgtttat 36286438  T
Q  154 cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatcaaggagtagaattcttggatctttcagaatt 253  Q
    ||| ||| |||| || | ||| ||||||| | ||||||||||  ||||||||||||| || || |||||||| || ||||||||||||||||| | ||||    
T  36286437 catgattttgtctagtgcctcctgtactattttttcagattccacatcaagggcactagtagcctcatcaagaagaagaattcttggatcttttaaaatt 36286338  T
Q  254 gctcttgctatagcaattctttgctttt 281  Q
    | ||| |||||||||| ||| |||||||    
T  36286337 gatctagctatagcaactctctgctttt 36286310  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 270
Target Start/End: Original strand, 38525248 - 38525360
Alignment:
Q  158 attctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatcaaggagtagaattcttggatctttcagaattgctc 257  Q
    ||||| ||||| | |||||| || || |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||  || || |||||||    
T  38525248 attctatccagagcctcttgcaccaccctttcagattctgcatcaagtgcacttgtagcttcatcaagaagtagaattcttggattcttaaggattgctc 38525347  T
Q  258 ttgctatagcaat 270  Q
    |||| || |||||    
T  38525348 ttgcaatcgcaat 38525360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 38566397 - 38566497
Alignment:
Q  170 gtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatcaaggagtagaattcttggatctttcagaattgctcttgctatagcaa 269  Q
    |||||||||||||| |||||||||| ||||||||| |||||||| |||||||| || |||| |||||||||||  || || ||||||||||| || ||||    
T  38566397 gtctcttgtactaccctttcagattttgcatcaagtgcacttgtagcttcatctagaagtaaaattcttggattcttaagtattgctcttgcaatggcaa 38566496  T
Q  270 t 270  Q
    |    
T  38566497 t 38566497  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 5823594 - 5823519
Alignment:
Q  206 gcacttgttgcttcatcaaggagtagaattcttggatctttcagaattgctcttgctatagcaattctttgctttt 281  Q
    |||||||||||||||||||| || || ||||||||||  ||||  || || ||||| || ||||||||||||||||    
T  5823594 gcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgctttt 5823519  T

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