View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_63 (Length: 288)
Name: NF9388_low_63
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 8032081 - 8031815
Alignment:
| Q |
15 |
atactcaaattatcctagcttttgatctcacgatgaggacagcccacatttgcggtccttgatgcctcatattggcccaattcctcctcctgatctatct |
114 |
Q |
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| T |
8032081 |
atactcaaattatcccaacttttgatctcacgatgaggacagcccacatttgcggtccttgatgcatcatattggcccaattcctcctcctgatctatct |
8031982 |
T |
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| Q |
115 |
gggttgtctaacctgtatcagacgttggggtgtaccgtccatgcactatcaatgtcgtcacattttgtaaacgagtttaaaaggacaaggttttccatat |
214 |
Q |
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| T |
8031981 |
gggttgtctgacccgtatcagacgttgaggtgtaccgtccatgcactatcaatgtcgtcacattttgtaaacgagtttaaaaggacaaggttttccatat |
8031882 |
T |
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| Q |
215 |
gttagtaactcttgatgctaattatgaaagttcttagtagtcatattctcatgttgttaaagtgata |
281 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8031881 |
gttagtaactcttgatgctgattatgaaagttcttagtagtcatattctcatgttgttaaagtgata |
8031815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 165 - 281
Target Start/End: Complemental strand, 8031760 - 8031644
Alignment:
| Q |
165 |
aatgtcgtcacattttgtaaacgagtttaaaaggacaaggttttccatatgttagtaactcttgatgctaattatgaaagttcttagtagtcatattctc |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8031760 |
aatgtcgtcacattttgtaaacgagtttaaaaggacaaggttttccatatgttagtaactcttgatgctgattatgaaagttcttagtagtcatattctc |
8031661 |
T |
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| Q |
265 |
atgttgttaaagtgata |
281 |
Q |
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| T |
8031660 |
atgttgttaaagtgata |
8031644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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