View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388_low_65 (Length: 287)

Name: NF9388_low_65
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388_low_65
NF9388_low_65
[»] chr2 (17 HSPs)
chr2 (1-148)||(10355658-10355805)
chr2 (1-148)||(35734525-35734672)
chr2 (1-148)||(16254960-16255107)
chr2 (1-148)||(28808712-28808864)
chr2 (19-148)||(7759303-7759433)
chr2 (21-146)||(16256196-16256321)
chr2 (21-148)||(34210347-34210474)
chr2 (208-262)||(10355864-10355918)
chr2 (208-262)||(16255167-16255221)
chr2 (208-262)||(35734411-35734465)
chr2 (33-148)||(43589809-43589924)
chr2 (208-262)||(28808923-28808977)
chr2 (216-262)||(7759071-7759117)
chr2 (216-258)||(7759119-7759161)
chr2 (216-259)||(7759202-7759245)
chr2 (209-248)||(16256384-16256423)
chr2 (61-132)||(35851671-35851742)
[»] chr1 (23 HSPs)
chr1 (1-148)||(49622841-49622987)
chr1 (6-148)||(15544473-15544615)
chr1 (19-148)||(11376681-11376810)
chr1 (24-148)||(29743475-29743599)
chr1 (1-146)||(46833205-46833352)
chr1 (21-148)||(261672-261798)
chr1 (21-148)||(42886737-42886864)
chr1 (21-148)||(44565069-44565196)
chr1 (1-148)||(51621791-51621938)
chr1 (33-148)||(2326768-2326883)
chr1 (208-262)||(49622727-49622781)
chr1 (208-262)||(261558-261612)
chr1 (208-262)||(2326655-2326709)
chr1 (208-262)||(15544675-15544729)
chr1 (208-262)||(44565256-44565310)
chr1 (208-262)||(51621678-51621732)
chr1 (208-262)||(11376870-11376924)
chr1 (209-262)||(29743658-29743711)
chr1 (208-262)||(46833445-46833499)
chr1 (61-148)||(37661901-37661989)
chr1 (33-148)||(33505744-33505859)
chr1 (216-259)||(42886921-42886964)
chr1 (95-148)||(15429337-15429390)
[»] chr6 (7 HSPs)
chr6 (1-148)||(18227356-18227503)
chr6 (35-146)||(20219057-20219168)
chr6 (35-146)||(22113082-22113193)
chr6 (35-148)||(11455187-11455297)
chr6 (216-262)||(20219243-20219289)
chr6 (216-262)||(22113268-22113314)
chr6 (208-251)||(18227562-18227605)
[»] scaffold0470 (1 HSPs)
scaffold0470 (21-148)||(60-187)
[»] chr8 (11 HSPs)
chr8 (21-148)||(6610772-6610899)
chr8 (25-148)||(43633687-43633808)
chr8 (21-146)||(36557098-36557223)
chr8 (21-148)||(21595150-21595277)
chr8 (24-146)||(2955985-2956107)
chr8 (209-262)||(6610658-6610711)
chr8 (21-145)||(40977601-40977725)
chr8 (208-259)||(43633868-43633919)
chr8 (61-148)||(43047996-43048083)
chr8 (62-148)||(22976474-22976560)
chr8 (217-249)||(27424325-27424357)
[»] chr5 (9 HSPs)
chr5 (24-148)||(35384223-35384347)
chr5 (21-142)||(30411399-30411520)
chr5 (21-148)||(1751359-1751486)
chr5 (21-140)||(11726579-11726698)
chr5 (23-148)||(10329701-10329828)
chr5 (208-262)||(35384406-35384460)
chr5 (21-148)||(37276008-37276135)
chr5 (208-262)||(30411279-30411333)
chr5 (61-148)||(37275249-37275336)
[»] chr7 (9 HSPs)
chr7 (21-148)||(29008622-29008749)
chr7 (1-148)||(12313887-12314034)
chr7 (21-146)||(47645487-47645612)
chr7 (21-148)||(1827953-1828080)
chr7 (21-148)||(33118696-33118828)
chr7 (32-147)||(44119040-44119155)
chr7 (212-262)||(29008509-29008559)
chr7 (216-262)||(42027803-42027849)
chr7 (216-252)||(40040517-40040553)
[»] chr4 (22 HSPs)
chr4 (21-148)||(37563788-37563915)
chr4 (33-148)||(38024524-38024639)
chr4 (21-148)||(6885015-6885143)
chr4 (21-148)||(29191025-29191151)
chr4 (21-148)||(55873560-55873687)
chr4 (11-148)||(29118948-29119085)
chr4 (72-148)||(54975830-54975906)
chr4 (1-148)||(49284074-49284225)
chr4 (21-146)||(42739582-42739707)
chr4 (21-148)||(1921209-1921336)
chr4 (23-146)||(47497566-47497690)
chr4 (21-148)||(22443731-22443858)
chr4 (208-262)||(29191204-29191258)
chr4 (208-262)||(54975965-54976019)
chr4 (33-148)||(41279202-41279317)
chr4 (208-259)||(38024414-38024465)
chr4 (66-134)||(8067199-8067268)
chr4 (216-262)||(6884912-6884958)
chr4 (208-262)||(37563973-37564027)
chr4 (21-146)||(39593207-39593332)
chr4 (216-262)||(55873758-55873804)
chr4 (1-39)||(54975802-54975840)
[»] scaffold0155 (1 HSPs)
scaffold0155 (29-146)||(28057-28174)
[»] chr3 (2 HSPs)
chr3 (32-148)||(46485484-46485600)
chr3 (31-132)||(7311392-7311490)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 10355658 - 10355805
Alignment:
Q  1 atatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttc 100  Q
    |||| |||| |||||||||||||||||||||||||||||| ||||||||||||| || ||||||| ||| |||||||||||||||||||||||||||||     
T  10355658 atatgtttggttcaaatgatgggagggaagagattttaattaaatatgtgtttggttcataaggggaggggagggattttaaaaccaaattactttttta 10355757  T
Q  101 tccctctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10355758 tccctctaaccttaaaacaatatcatgatttttatattattcacttca 10355805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 35734672 - 35734525
Alignment:
Q  1 atatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttc 100  Q
    |||| |||| |||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||     
T  35734672 atatgtttggttcaaatgatgggagggaagggattttaattaaatatgtgtttggttcataagggaaggggagggattttaaaaccaaattactttttta 35734573  T
Q  101 tccctctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35734572 tccctctaaccttaaaacaatatcatgatttttatattattcacttca 35734525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 16254960 - 16255107
Alignment:
Q  1 atatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttc 100  Q
    |||| |||| ||||||| |||||||||||| ||||||||| ||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||     
T  16254960 atatgtttggttcaaataatgggagggaagggattttaattaaatatgtgtttggttcataagggaaggggagggattttaaaaccaaattactttttta 16255059  T
Q  101 tccctctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  16255060 tccctctaaccttgaaacaatatcaagatctttatattattcacttca 16255107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 28808712 - 28808864
Alignment:
Q  1 atatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttata-----agggaaggagagggattttaaaaccaaattactt 95  Q
    |||| |||| ||||||||||||||||||||| |||||||| ||||||||||||| || |||     |||| ||| |||||||||||||||||||||||||    
T  28808712 atatgtttggttcaaatgatgggagggaagatattttaattaaatatgtgtttggttcataaggggaggggaggggagggattttaaaaccaaattactt 28808811  T
Q  96 ttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28808812 ttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 28808864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 7759433 - 7759303
Alignment:
Q  19 atgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaatta-cttttttctccctctaaccttaaaa 117  Q
    |||||||||||||||||||||| ||||||||||||| || ||||||| ||| ||| ||||||||||||||||||  |||||| |||||||||||||||||    
T  7759433 atgggagggaagagattttaattaaatatgtgtttggttcataaggggaggggagagattttaaaaccaaattattttttttatccctctaaccttaaaa 7759334  T
Q  118 caatatcatgatttttatattattcacttca 148  Q
    |||||||||||||||||||||||||||||||    
T  7759333 caatatcatgatttttatattattcacttca 7759303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 16256196 - 16256321
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    ||||||| || |||||||||||||||| ||||||||| | ||||| ||| ||||||||||||||| ||||||||||||| |||||||||  |||||| |     
T  16256196 gggaggggagggattttaatcaaatatatgtttgattcacaaggggaggggagggattttaaaactaaattacttttttatccctctaatattaaaatag 16256295  T
Q  121 tatcatgatttttatattattcactt 146  Q
    ||||| |||||||| |||||||||||    
T  16256296 tatcacgatttttaaattattcactt 16256321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 34210474 - 34210347
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    ||||||| || |||||||||||||||| |||||| || |  |||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| |     
T  34210474 gggaggggagggattttaatcaaatatatgtttggttcacgaggggaggggagggattttaaaactaaattacttttttatccctataatattaaaatag 34210375  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    |||||  ||||||| |||||||||||||    
T  34210374 tatcacaatttttaaattattcacttca 34210347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 10355864 - 10355918
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10355864 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 10355918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 16255167 - 16255221
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16255167 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 16255221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 35734465 - 35734411
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35734465 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 35734411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 43589924 - 43589809
Alignment:
Q  33 attttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttt 132  Q
    ||||||||||||||  |||||| || | ||||| |||  || ||||||||||| ||||||||||||| |||||||||  |||||||| |||||  |||||    
T  43589924 attttaatcaaatacatgtttggttcacaaggggagggcagagattttaaaactaaattacttttttatccctctaatattaaaacagtatcacaatttt 43589825  T
Q  133 tatattattcacttca 148  Q
    || |||||||||||||    
T  43589824 taaattattcacttca 43589809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 28808923 - 28808977
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  28808923 gttctaacaaaatattagatattcataaatattagagcacttctaaaataatcta 28808977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 7759117 - 7759071
Alignment:
Q  216 aaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  7759117 aaaatattaggtattcataaatattagagcacttctaaaataatcta 7759071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 7759161 - 7759119
Alignment:
Q  216 aaaatattaggtattcataaatattagagcacttctagaataa 258  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  7759161 aaaatattaggtattcataaatattagagcacttctaaaataa 7759119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 7759245 - 7759202
Alignment:
Q  216 aaaatattaggtattcataaatattagagcacttctagaataat 259  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  7759245 aaaatattaggtattcataaatatcagagcacttctaaaataat 7759202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 16256384 - 16256423
Alignment:
Q  209 ttctaacaaaatattaggtattcataaatattagagcact 248  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  16256384 ttctaacaagatattgggtattcataaatattagagcact 16256423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 35851671 - 35851742
Alignment:
Q  61 aagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttt 132  Q
    |||||||||  | |||||| || |||||||||||||||| || ||||||  |||||||||| ||||||||||    
T  35851671 aagggaagggaaaggatttcaacaccaaattacttttttatcgctctaatattaaaacaatctcatgatttt 35851742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 49622987 - 49622841
Alignment:
Q  1 atatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttc 100  Q
    |||| |||| ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||     
T  49622987 atatgtttggttcaaatgatgggagggaagaaattttaattaaatatgtgtttggtttataagggaag-agagggattttaaaaccaaattattttttta 49622889  T
Q  101 tccctctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49622888 tccctctaaccttaaaacaatatcatgatttttatattattcacttca 49622841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 15544473 - 15544615
Alignment:
Q  6 tttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccct 105  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||| || ||||||| ||| ||||||||||||||||||||||| ||||| |||||    
T  15544473 tttggttcaaatgatgggagggaagggattttaattaaatatgtgtttggttcataaggggaggggagggattttaaaaccaaattacctttttatccct 15544572  T
Q  106 ctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15544573 ctaaccttaaaacaatatcatgatttttatattattcacttca 15544615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 11376681 - 11376810
Alignment:
Q  19 atgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaac 118  Q
    |||||||||||||||||||||| ||||||||||||| || ||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  11376681 atgggagggaagagattttaattaaatatgtgtttggttcataaggggaggggagagattttaaaaccaaattacttttttatccctctaaccttaaaac 11376780  T
Q  119 aatatcatgatttttatattattcacttca 148  Q
    ||||||||||||||||||||||||||||||    
T  11376781 aatatcatgatttttatattattcacttca 11376810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 29743475 - 29743599
Alignment:
Q  24 agggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatat 123  Q
    ||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29743475 agggaagggattttaattaaatatgtgtttggttcataagggaaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaatat 29743574  T
Q  124 catgatttttatattattcacttca 148  Q
    |||||||||||||||||||||||||    
T  29743575 catgatttttatattattcacttca 29743599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 46833205 - 46833352
Alignment:
Q  1 atatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattac--ttttt 98  Q
    ||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| || ||||||| ||| || ||||||||||||||||||||  |||||    
T  46833205 atatatttggttcaaatgatgggagggaagggattttaattaaatatgtgtttggttcataaggggaggggaaggattttaaaaccaaattacttttttt 46833304  T
Q  99 tctccctctaaccttaaaacaatatcatgatttttatattattcactt 146  Q
    | ||||||||||||||||||||||||||||||||| ||||||||||||    
T  46833305 tatccctctaaccttaaaacaatatcatgatttttctattattcactt 46833352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 261798 - 261672
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    |||||||||||||||||||| ||||||||||||| || ||||||| ||| ||| ||||||||||||||||||||||||| | ||||||||||||||||||    
T  261798 gggagggaagagattttaattaaatatgtgtttggttcataaggggaggggagagattttaaaaccaaattacttttttat-cctctaaccttaaaacaa 261700  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    ||||||||||||||||||||||||||||    
T  261699 tatcatgatttttatattattcacttca 261672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 42886737 - 42886864
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    |||| ||||| ||||||||| ||||||||||||| || ||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  42886737 gggatggaagggattttaattaaatatgtgtttggttcataaggggaggggagagattttaaaaccaaattacttttttatccctctaaccttaaaacaa 42886836  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    ||||||||||||||||||||||||||||    
T  42886837 tatcatgatttttatattattcacttca 42886864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 44565069 - 44565196
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    |||||| ||||||||| ||| ||||||||||||| || ||||||| ||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  44565069 gggaggaaagagatttcaattaaatatgtgtttggttcataaggggaggggagggattttaaaatcaaattacctttttatccctctaaccttaaaacaa 44565168  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    ||||||||||||||||||||||||||||    
T  44565169 tatcatgatttttatattattcacttca 44565196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 51621938 - 51621791
Alignment:
Q  1 atatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttc 100  Q
    |||| |||| |||||||||||||||| ||  ||||||||| ||||||||||||| || ||||||  ||| ||| |||||||||||||||||||||||||     
T  51621938 atatgtttggttcaaatgatgggaggaaatggattttaattaaatatgtgtttggttcataaggagaggggagagattttaaaaccaaattactttttta 51621839  T
Q  101 tccctctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    || || ||| ||||||||||||||||||||||||||||||||||||||    
T  51621838 tcactgtaatcttaaaacaatatcatgatttttatattattcacttca 51621791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 2326883 - 2326768
Alignment:
Q  33 attttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttt 132  Q
    |||||||| |||||||| |||| || ||| ||| ||| ||||||||||||||||||||||| |||||  |||||||||||||||||||||| ||||||||    
T  2326883 attttaattaaatatgtatttggttcatacggggaggggagggattttaaaaccaaattacctttttacccctctaaccttaaaacaatattatgatttt 2326784  T
Q  133 tatattattcacttca 148  Q
    ||||||||||||||||    
T  2326783 tatattattcacttca 2326768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 49622781 - 49622727
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49622781 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 49622727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 261612 - 261558
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  261612 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 261558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 2326709 - 2326655
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2326709 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 2326655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 15544675 - 15544729
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15544675 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 15544729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 44565256 - 44565310
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44565256 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 44565310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 51621732 - 51621678
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51621732 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 51621678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 11376870 - 11376924
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  11376870 gttctaacaaaatattaggtattcataaatattaaagcacttctaaaataatcta 11376924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 29743658 - 29743711
Alignment:
Q  209 ttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  29743658 ttctaacaaaatattagatattcataaatattagagcacttctaaaataatcta 29743711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 46833445 - 46833499
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    |||||||||||||||||||||||||||||||||||| || ||||| |||||||||    
T  46833445 gttctaacaaaatattaggtattcataaatattagaacaattctaaaataatcta 46833499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 37661989 - 37661901
Alignment:
Q  61 aagggaaggagagggattttaaaaccaaattacttttttc-tccctctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    ||||| ||| ||||||||||||||| |||||||||||||  |||||||||  |||||| | ||||| |||||||| |||||||||||||    
T  37661989 aaggggaggggagggattttaaaactaaattactttttttatccctctaatattaaaatagtatcacgatttttaaattattcacttca 37661901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 33505744 - 33505859
Alignment:
Q  33 attttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttt 132  Q
    |||| ||| |||||| |||||| || |  |||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| | |||||  |||||    
T  33505744 atttcaattaaatatatgtttggttcacgaggggaggggagggattttaaaactaaattacttttttatccctataatattaaaatagtatcacaatttt 33505843  T
Q  133 tatattattcacttca 148  Q
    || |||||||||||||    
T  33505844 taaattattcacttca 33505859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 42886921 - 42886964
Alignment:
Q  216 aaaatattaggtattcataaatattagagcacttctagaataat 259  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  42886921 aaaatattaggtattcataaatattagagcacttctaaaataat 42886964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 15429337 - 15429390
Alignment:
Q  95 tttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    ||||| ||||||||| ||||||||||| |||||||||| | |||||||||||||    
T  15429337 tttttatccctctaatcttaaaacaatctcatgattttaaaattattcacttca 15429390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 18227356 - 18227503
Alignment:
Q  1 atatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttc 100  Q
    |||| |||| |||||||||||||||||| | ||||||||| ||||||||||||| || ||||||| ||| |||||||||||||||||||||||||||||     
T  18227356 atatgtttggttcaaatgatgggagggacgggattttaattaaatatgtgtttggttcataaggggaggggagggattttaaaaccaaattactttttta 18227455  T
Q  101 tccctctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18227456 tccctctaaccttaaaacaatatcatgatttttatattattcacttca 18227503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 20219057 - 20219168
Alignment:
Q  35 tttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgattttta 134  Q
    |||||| ||||||||||||| || | |||||  ||  |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  20219057 tttaattaaatatgtgtttggttcacaaggggtgggaagggattttaaaaccaaattacttttttatccctctaatcttaaaacaatatcatgattttta 20219156  T
Q  135 tattattcactt 146  Q
     |||||||||||    
T  20219157 aattattcactt 20219168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 22113082 - 22113193
Alignment:
Q  35 tttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgattttta 134  Q
    |||||| ||||||||||||| || | |||||  ||  |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  22113082 tttaattaaatatgtgtttggttcacaaggggtgggaagggattttaaaaccaaattacttttttatccctctaatcttaaaacaatatcatgattttta 22113181  T
Q  135 tattattcactt 146  Q
     |||||||||||    
T  22113182 aattattcactt 22113193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 11455187 - 11455297
Alignment:
Q  35 tttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgattttta 134  Q
    ||||||||||||| |||||| || | ||||| ||| ||||||||||||||| ||||||||||||| | |||||||  |||||| | ||||  ||||||||    
T  11455187 tttaatcaaatatatgtttggttcacaaggggaggggagggattttaaaactaaattacttttttat-cctctaatattaaaatagtatc--gattttta 11455283  T
Q  135 tattattcacttca 148  Q
     |||||||||||||    
T  11455284 aattattcacttca 11455297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 20219243 - 20219289
Alignment:
Q  216 aaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  20219243 aaaatattaggtattcataaatattagagcacttctaaaataatcta 20219289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 22113268 - 22113314
Alignment:
Q  216 aaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  22113268 aaaatattaggtattcataaatattagagcacttctaaaataatcta 22113314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 18227562 - 18227605
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttct 251  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||    
T  18227562 gttctcacataatattaggtattcataaatattagagcacttct 18227605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 187 - 60
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    |||||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  187 gggagggaagggattttaattaaatatgtgtttggttcataagggaaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaa 88  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    ||||||||||||||||||||||||||||    
T  87 tatcatgatttttatattattcacttca 60  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 6610899 - 6610772
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    |||||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6610899 gggagggaagggattttaattaaatatgtgtttggttcataagggaaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaa 6610800  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    ||||||||||||||||||||||||||||    
T  6610799 tatcatgatttttatattattcacttca 6610772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 43633687 - 43633808
Alignment:
Q  25 gggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatc 124  Q
    |||||| ||||||||| ||||  ||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43633687 gggaagggattttaattaaat--gtgtttggttcataagggaaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaatatc 43633784  T
Q  125 atgatttttatattattcacttca 148  Q
    ||||||||||||||||||||||||    
T  43633785 atgatttttatattattcacttca 43633808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 36557098 - 36557223
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    ||||||| || |||||||||||||||| |||||| |||| ||||| ||| ||||||||||||||| ||||||||||||| |||||||||  |||||| |     
T  36557098 gggaggggagggattttaatcaaatatatgtttggtttacaaggggaggggagggattttaaaactaaattacttttttatccctctaatattaaaatag 36557197  T
Q  121 tatcatgatttttatattattcactt 146  Q
    ||||| |||||||| |||||||||||    
T  36557198 tatcacgatttttaaattattcactt 36557223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 21595277 - 21595150
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    ||||||| || |||||||||||||||| |||||| || | ||||| ||||||  ||||||||||| ||||||||||||| |||||||||  |||||| |     
T  21595277 gggaggggagggattttaatcaaatatatgtttggttcagaaggggaggagaaagattttaaaactaaattacttttttatccctctaatattaaaatag 21595178  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    ||||| |||||||| |||||||||||||    
T  21595177 tatcacgatttttaaattattcacttca 21595150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 2955985 - 2956107
Alignment:
Q  24 agggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatat 123  Q
    |||| ||||||||||||||||||| |||||| || | ||||| |||  || ||||||||||| ||||||||||||| |||||||||  |||||| | |||    
T  2955985 aggggagagattttaatcaaatatatgtttggttcacaaggggagggtagagattttaaaactaaattacttttttatccctctaatattaaaatagtat 2956084  T
Q  124 catgatttttatattattcactt 146  Q
    || |||||||| ||||| |||||    
T  2956085 cacgatttttaaattatccactt 2956107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 6610711 - 6610658
Alignment:
Q  209 ttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  6610711 ttctaacaaaatattagatattcataaatattagagcacttctaaaataatcta 6610658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 40977601 - 40977725
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    ||||||| || |||||||||||||||| |||||| || |  |||| ||| ||||||||||||||| |||||||| |||| ||||| |||  |||||| |     
T  40977601 gggaggggagggattttaatcaaatatatgtttggttcacgaggggaggggagggattttaaaactaaattactgttttgtccctataatattaaaatag 40977700  T
Q  121 tatcatgatttttatattattcact 145  Q
    |||||  ||||||| ||||||||||    
T  40977701 tatcacaatttttaaattattcact 40977725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 43633868 - 43633919
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataat 259  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  43633868 gttctaacaaaatattaggtattcataaatattagagcacttttaaaataat 43633919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 43047996 - 43048083
Alignment:
Q  61 aagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    ||||| ||| |||| |||||||||| ||||||||||||| |||||||||  |||||| |  || | |||||||| |||||||||||||    
T  43047996 aaggggaggggaggaattttaaaactaaattacttttttatccctctaatattaaaatagcataacgatttttaaattattcacttca 43048083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 22976474 - 22976560
Alignment:
Q  62 agggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    |||||||| ||||||| ||||||| ||||||||||||| ||||| |||  |||||| | |||||  ||||| | |||||||||||||    
T  22976474 agggaaggggagggatattaaaactaaattacttttttatccctataatattaaaatagtatcacaattttaaaattattcacttca 22976560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 27424357 - 27424325
Alignment:
Q  217 aaatattaggtattcataaatattagagcactt 249  Q
    |||||||||||||| ||||||||||||||||||    
T  27424357 aaatattaggtatttataaatattagagcactt 27424325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 35384223 - 35384347
Alignment:
Q  24 agggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatat 123  Q
    ||||||||||||||||| ||||||||||||| || |||| || ||| ||| |||||||||| |||||||||||||| |||||||||||||||||||||||    
T  35384223 agggaagagattttaattaaatatgtgtttggttcataatgggaggggagagattttaaaatcaaattacttttttatccctctaaccttaaaacaatat 35384322  T
Q  124 catgatttttatattattcacttca 148  Q
    |||||||||||||||||||||||||    
T  35384323 catgatttttatattattcacttca 35384347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 30411520 - 30411399
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    |||| ||||||||||||||| |||||| ||||||||| ||||||||| | || |||||||||||||||||||||||||| |||||||| |||||||||||    
T  30411520 gggaaggaagagattttaattaaatatatgtttgattcataagggaatgggatggattttaaaaccaaattacttttttatccctctagccttaaaacaa 30411421  T
Q  121 tatcatgatttttatattattc 142  Q
    ||||||||||||||||||||||    
T  30411420 tatcatgatttttatattattc 30411399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 1751359 - 1751486
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    ||||||| ||||||||||||||||||| |||||| || | ||||| ||| ||||||||||||||| ||||||||||||| |||||||||  |||||| |     
T  1751359 gggaggggagagattttaatcaaatatatgtttggttcacaaggggaggggagggattttaaaactaaattacttttttatccctctaatattaaaatag 1751458  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    ||||| |||||||| ||||| |||||||    
T  1751459 tatcacgatttttaaattatccacttca 1751486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 11726698 - 11726579
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    ||||||| ||||||||||||||||||| |||||| || | ||||| ||| ||||||||||||||| ||||||||||||| |||||||||  |||||| |     
T  11726698 gggaggggagagattttaatcaaatatatgtttggttcacaaggggaggggagggattttaaaactaaattacttttttatccctctaatattaaaatag 11726599  T
Q  121 tatcatgatttttatattat 140  Q
    ||||| |||||||| |||||    
T  11726598 tatcacgatttttaaattat 11726579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 10329828 - 10329701
Alignment:
Q  23 gagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattactt--ttttctccctctaaccttaaaacaa 120  Q
    ||||| ||||||||||||||||||| |||||| || | ||||| | | ||||||||||||||| |||||||||  |||| |||||||||  |||||| |     
T  10329828 gaggggagagattttaatcaaatatatgtttggttcacaaggggatgggagggattttaaaactaaattacttttttttatccctctaatattaaaatag 10329729  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    ||||| |||||||| |||||||||||||    
T  10329728 tatcacgatttttaaattattcacttca 10329701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 35384406 - 35384460
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35384406 gttcgaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 35384460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 37276008 - 37276135
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    ||||||| || ||||| ||||||||||  ||||| || | ||||| ||| ||| ||||||||||| | ||||||||| | |||||||||  |||||| |     
T  37276008 gggaggggagggatttcaatcaaatataggtttggttcacaaggggaggggagagattttaaaactacattacttttctatccctctaatattaaaatag 37276107  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    ||||| |||||||| |||||||||||||    
T  37276108 tatcacgatttttaaattattcacttca 37276135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 30411333 - 30411279
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    |||||||||||||||||| ||| |||||||||||||||||||||| |||||||||    
T  30411333 gttctaacaaaatattagatatccataaatattagagcacttctaaaataatcta 30411279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 37275336 - 37275249
Alignment:
Q  61 aagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    ||||| ||| ||| ||||||||||| ||||||||||| | |||||||||  |||||| | ||||| |||||||| |||||||||||||    
T  37275336 aaggggaggggagagattttaaaactaaattacttttctatccctctaatattaaaatagtatcacgatttttaaattattcacttca 37275249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 29008749 - 29008622
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    ||||| |||||||||||||| ||||||||||||| ||  || ||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29008749 gggagtgaagagattttaattaaatatgtgtttggttcgtacggggaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaa 29008650  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    ||| ||||||||||||||||||||||||    
T  29008649 tattatgatttttatattattcacttca 29008622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 12314034 - 12313887
Alignment:
Q  1 atatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttc 100  Q
    |||| |||| |||||||||||||||||||||||||||||| ||||||||||||| || | | ||| ||| |||||||||||||||  ||||||||||||     
T  12314034 atatgtttggttcaaatgatgggagggaagagattttaattaaatatgtgtttggttcacagggggaggggagggattttaaaactgaattactttttta 12313935  T
Q  101 tccctctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    |||||||||  |||||| | ||||| |||||||| |||||||||||||    
T  12313934 tccctctaatattaaaatagtatcacgatttttaaattattcacttca 12313887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 47645487 - 47645612
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    ||||||| ||||||||||||||||||| |||||| || | ||||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| |     
T  47645487 gggaggggagagattttaatcaaatatatgtttggttcacaaggggaggggagggattttaaaactaaattacttttttatccctttaatattaaaatag 47645586  T
Q  121 tatcatgatttttatattattcactt 146  Q
    ||||| |||||||| |||||||||||    
T  47645587 tatcacgatttttaaattattcactt 47645612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 1827953 - 1828080
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    ||||||| ||||||||||||||||||| |||||| || | ||||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| |     
T  1827953 gggaggggagagattttaatcaaatatatgtttggttcacaaggggaggggagggattttaaaactaaattacttttttatccctataatattaaaatag 1828052  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    ||||| |||||||| ||||| |||||||    
T  1828053 tatcacgatttttaaattatccacttca 1828080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 33118696 - 33118828
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttata-----agggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaa 115  Q
    ||||||||||||||||||||||||||| |||||| || | |     |||| ||| ||||||||||||||| |||||||||| || |||||||||  ||||    
T  33118696 gggagggaagagattttaatcaaatatatgtttggttcacaagggtaggggaggggagggattttaaaactaaattactttattatccctctaatattaa 33118795  T
Q  116 aacaatatcatgatttttatattattcacttca 148  Q
    || | ||||| |||||||| |||||||||||||    
T  33118796 aatagtatcacgatttttaaattattcacttca 33118828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 44119155 - 44119040
Alignment:
Q  32 gattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgattt 131  Q
    |||||||||||||||| |||||| || | ||||| | | ||||||||||||||| ||||||||||||| ||| |||||  |||||| | ||||| |||||    
T  44119155 gattttaatcaaatatatgtttggttcagaaggggatgggagggattttaaaactaaattacttttttatccatctaatattaaaatagtatcacgattt 44119056  T
Q  132 ttatattattcacttc 147  Q
    ||| ||||||||||||    
T  44119055 ttaaattattcacttc 44119040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 29008559 - 29008509
Alignment:
Q  212 taacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29008559 taacaaaatattaggtattcataaatattagagcacttctaaaataatcta 29008509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 42027849 - 42027803
Alignment:
Q  216 aaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  42027849 aaaatattaggtattcataaatattagagcacttctaaaataatcta 42027803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 40040517 - 40040553
Alignment:
Q  216 aaaatattaggtattcataaatattagagcacttcta 252  Q
    |||||||||||||||||||||||||| |||| |||||    
T  40040517 aaaatattaggtattcataaatattaaagcagttcta 40040553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 37563788 - 37563915
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    |||||| ||||||||||||| |||||| |||||| || ||||||| ||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||    
T  37563788 gggaggaaagagattttaattaaatatatgtttggttcataaggggaggggagagattttaaaatcaaattacttttttatccctctaaccttaaaacaa 37563887  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    ||||||||||||||||||||||||||||    
T  37563888 tatcatgatttttatattattcacttca 37563915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 38024639 - 38024524
Alignment:
Q  33 attttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttt 132  Q
    |||||||| ||||||||||||| || |||| || ||| ||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  38024639 attttaattaaatatgtgtttggttcataaagggaggggagagattttaaaaccaaattacttttttatccttctaaccttaaaacaatatcatgatttt 38024540  T
Q  133 tatattattcacttca 148  Q
    ||||||||||||||||    
T  38024539 tatattattcacttca 38024524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 6885143 - 6885015
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccct-ctaaccttaaaaca 119  Q
    ||||| |||| ||||||||| ||||||||||||| || ||||||||||| |||| ||||||||| |||||||| ||||| ||| | ||||||||||||||    
T  6885143 gggagagaagggattttaattaaatatgtgtttggttcataagggaaggggaggaattttaaaatcaaattacctttttatccgtgctaaccttaaaaca 6885044  T
Q  120 atatcatgatttttatattattcacttca 148  Q
    |||||||||||||||||||||||||||||    
T  6885043 atatcatgatttttatattattcacttca 6885015  T

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Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 29191025 - 29191151
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    ||||| |||| ||||||||| || |||||||||| || ||| |||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  29191025 gggagtgaagggattttaattaagtatgtgtttggttcatacgggaggg-gagggattttaaaaccaaattacctttttatccctctaaccttaaaacaa 29191123  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    ||| ||||||||||||||||||||||||    
T  29191124 tattatgatttttatattattcacttca 29191151  T

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Target: chr4; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 55873560 - 55873687
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    |||||||  ||||||||||| ||||||||||||| || | ||||| |||  || ||||||||||||||||||||||||| ||||||||| ||||||| ||    
T  55873560 gggaggggggagattttaattaaatatgtgtttggttcacaaggggagggaagagattttaaaaccaaattacttttttatccctctaatcttaaaataa 55873659  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    |||||||||||||| |||||||||||||    
T  55873660 tatcatgatttttaaattattcacttca 55873687  T

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Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 29118948 - 29119085
Alignment:
Q  11 ttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaac 110  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| || | || |  ||| ||||||||||||||| ||||||||||||| |||||||||     
T  29118948 ttcaaatgatgggaggggagagattttaatcaaatatatgtttggttcacaaagagaggggagggattttaaaactaaattacttttttatccctctaat 29119047  T
Q  111 cttaaaacaatatcatgatttttatattattcacttca 148  Q
    ||||||| | ||| | |||||||| |||||||||||||    
T  29119048 cttaaaatagtattacgatttttaaattattcacttca 29119085  T

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Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 54975830 - 54975906
Alignment:
Q  72 agggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54975830 agggattttaaaatcaaattacttttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 54975906  T

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Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 49284225 - 49284074
Alignment:
Q  1 atatatttgcttcaaatgatgggagggaagag-----attttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattactt 95  Q
    |||| |||| |||||||||||||||||||| |     ||||||||||||||| |||||| || | |||| |||| ||| ||||||||||| |||||||||    
T  49284225 atatgtttggttcaaatgatgggagggaaggggagggattttaatcaaatatatgtttggttcacaagg-aaggggagagattttaaaactaaattactt 49284127  T
Q  96 ttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 148  Q
    |||| |||||||||  |||||| | |||||||||||||| |||||||||||||    
T  49284126 ttttatccctctaatattaaaatagtatcatgatttttaaattattcacttca 49284074  T

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Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 42739707 - 42739582
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    ||||||| || |||||||||||||||| |||||| || | ||||| ||| |||| |||||||||| ||||||||||||| |||||||||  |||||| |     
T  42739707 gggaggggagggattttaatcaaatatatgtttggttcacaaggggaggggaggaattttaaaactaaattacttttttatccctctaatattaaaatag 42739608  T
Q  121 tatcatgatttttatattattcactt 146  Q
    ||||| |||||||| |||||||||||    
T  42739607 tatcacgatttttaaattattcactt 42739582  T

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Target: chr4; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 1921209 - 1921336
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    ||||||| || |||||||||||||||| |||||| || |  |||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| |     
T  1921209 gggaggggagggattttaatcaaatatatgtttggttcacgagggtaggggagggattttaaaacaaaattacttttttatccctataatattaaaatag 1921308  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    |||||  ||||||| |||||||||||||    
T  1921309 tatcacaatttttaaattattcacttca 1921336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 47497566 - 47497690
Alignment:
Q  23 gagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaa-ccttaaaacaat 121  Q
    ||||| |||||||||||| |||| | |||||| || | ||||| ||| || ||||||||| |||||||||||||||| ||||||||| ||||||||| ||    
T  47497566 gaggggagagattttaattaaatgtatgtttggttcacaaggggaggtgaaggattttaacaccaaattacttttttatccctctaatccttaaaactat 47497665  T
Q  122 atcatgatttttatattattcactt 146  Q
     | |||||||| | |||||||||||    
T  47497666 cttatgattttaaaattattcactt 47497690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 22443858 - 22443731
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 120  Q
    ||||||| || |||||||||||||||| |||||| || |  |||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| |     
T  22443858 gggaggggagggattttaatcaaatatatgtttggttcacgaggggaggggagggattttaaaactaaattacttttttatccctataatattaaaatag 22443759  T
Q  121 tatcatgatttttatattattcacttca 148  Q
    ||| |  ||||||| |||||||||||||    
T  22443758 tattacaatttttaaattattcacttca 22443731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 29191204 - 29191258
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  29191204 gttctaacaaaatattaggtattcataaatattaaagcacttctaaaataatcta 29191258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 54975965 - 54976019
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  54975965 gttctaacaaaatattagatattcataaatattagagcacttctaaaataatcta 54976019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 41279202 - 41279317
Alignment:
Q  33 attttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttc-tccctctaaccttaaaacaatatcatgattt 131  Q
    |||||||| |||||||| |||| || | ||||| |||  || ||||||| | ||||||| |||||||  ||||||||| |||||||||||||||||||||    
T  41279202 attttaattaaatatgtatttggttcacaaggggagggaagagattttata-ccaaattgctttttttatccctctaatcttaaaacaatatcatgattt 41279300  T
Q  132 ttatattattcacttca 148  Q
    ||| |||||||||||||    
T  41279301 ttaaattattcacttca 41279317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 38024465 - 38024414
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataat 259  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  38024465 gttctaataaaatattaggtattcataaatattagagcacttctaaaataat 38024414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 8067199 - 8067268
Alignment:
Q  66 aaggagagggattttaaaaccaaattacttttttc-tccctctaaccttaaaacaatatcatgattttta 134  Q
    |||||||||||||||||| |||| ||||||||||  ||||| ||| ||||||||||||||||||||||||    
T  8067199 aaggagagggattttaaatccaagttactttttttatccctttaatcttaaaacaatatcatgattttta 8067268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 6884958 - 6884912
Alignment:
Q  216 aaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  6884958 aaaatattaagtattcataaatattagagcacttctaaaataatcta 6884912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 37563973 - 37564027
Alignment:
Q  208 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    ||||||| ||||||||||||||||||||||||||||||  ||||| |||||||||    
T  37563973 gttctaataaaatattaggtattcataaatattagagcgtttctaaaataatcta 37564027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 39593332 - 39593207
Alignment:
Q  21 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaa-ccttaaaaca 119  Q
    ||||||| |||||||||||| |||| | |||||| || | ||||| ||| ||||| |||||| |||||||||| ||||| ||| ||||| |||||||||     
T  39593332 gggaggggagagattttaattaaatgtatgtttggttcagaaggggaggtgaggg-ttttaacaccaaattacctttttatccttctaatccttaaaact 39593234  T
Q  120 atatcatgatttttatattattcactt 146  Q
    || |||||||||| | ||||| |||||    
T  39593233 atctcatgattttaaaattatccactt 39593207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 55873758 - 55873804
Alignment:
Q  216 aaaatattaggtattcataaatattagagcacttctagaataatcta 262  Q
    |||||||||||||||||||||||||| ||||||||||  ||||||||    
T  55873758 aaaatattaggtattcataaatattatagcacttctaagataatcta 55873804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 54975802 - 54975840
Alignment:
Q  1 atatatttgcttcaaatgatgggagggaagagattttaa 39  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  54975802 atatatttggttcaaatgatgggagggaagggattttaa 54975840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 146
Target Start/End: Original strand, 28057 - 28174
Alignment:
Q  29 agagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatga 128  Q
    ||||||||||||||||||| |||||| || | ||||| ||| ||||||||||||||| ||||||||||||| ||| |||||  |||||| | ||||||||    
T  28057 agagattttaatcaaatatatgtttggttcacaaggggaggggagggattttaaaactaaattacttttttatccatctaatattaaaatagtatcatga 28156  T
Q  129 tttttatattattcactt 146  Q
    ||||||  ||||||||||    
T  28157 tttttaacttattcactt 28174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 148
Target Start/End: Complemental strand, 46485600 - 46485484
Alignment:
Q  32 gattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgattt 131  Q
    |||||||||||||||  |||||| || | ||||| |||  |||||||||||||| ||||||||||||| |||||||||  |||||||| || ||  ||||    
T  46485600 gattttaatcaaatacatgtttggttcacaaggggagggcagggattttaaaactaaattacttttttatccctctaatattaaaacagtaacacaattt 46485501  T
Q  132 ttatattattcacttca 148  Q
    ||| |||||||||||||    
T  46485500 ttaaattattcacttca 46485484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 7311392 - 7311490
Alignment:
Q  31 agattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatt 130  Q
    |||||||||| |||||| |||||| | || ||||| ||  ||| |||||||||| |||||||   |||| ||||||||| ||||||||||| ||||||||    
T  7311392 agattttaattaaatatatgtttggtgtagaaggggagacgagagattttaaaatcaaatta---ttttatccctctaatcttaaaacaatctcatgatt 7311488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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