View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_66 (Length: 286)
Name: NF9388_low_66
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 32796187 - 32796431
Alignment:
| Q |
1 |
tggatcaatctcacttgcattcttgagctgagtggattgttaatatctattctaacaccactttctagagaaaacaaaggggaagaagaatgttggtaaa |
100 |
Q |
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| T |
32796187 |
tggatcaatctcacttgcattcttgagctgagtggattgttaatatctattctaacaccactttctagagaaaacaaaggggaagaagaatgttggtaaa |
32796286 |
T |
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| Q |
101 |
tctgagtacttgtgcgttgggagaagcatatttctaaaatttgtgtcttcttgtgttgtgtccatgttttatgacaaataaatttagaaatattttggta |
200 |
Q |
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| T |
32796287 |
tctgagtacttgtgcgttgggagaagcatatttctaaaatttgtgtcttcttgtgttgtgtccatgttttatgacaaataaatttagaaatattttggta |
32796386 |
T |
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| Q |
201 |
ctacgctttgaagttcaaagaaaatatacttatttacaaatattt |
245 |
Q |
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| T |
32796387 |
ctacgctttgaagttcaaagagaatatacttatttacaaatattt |
32796431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 32796452 - 32796489
Alignment:
| Q |
228 |
acttatttacaaatatttaaaagtcttgcctatacagt |
265 |
Q |
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| T |
32796452 |
acttatttacaaatatctaaaagtcttgcttatacagt |
32796489 |
T |
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