View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_68 (Length: 285)
Name: NF9388_low_68
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 98 - 266
Target Start/End: Original strand, 32724754 - 32724922
Alignment:
| Q |
98 |
ggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttatttgggttaacgggctttttagaaaggggttgaaggtag |
197 |
Q |
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| T |
32724754 |
ggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacataagttatttgggttaacaggctttttagaaaggtgttgaaggtaa |
32724853 |
T |
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| Q |
198 |
tggatgttaaaagattctttctcagcatttcacggttcagagaaaaaagtatggttcttatgtctagac |
266 |
Q |
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| T |
32724854 |
tggatgttaaaagattctttctcagcatttcatggttcagagaaaaaagtatggttcttatgtcaagac |
32724922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 127 - 266
Target Start/End: Original strand, 4001942 - 4002081
Alignment:
| Q |
127 |
tttttgttttgtatcaatggtgacacaagttatttgggttaacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatt |
226 |
Q |
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| T |
4001942 |
ttttttttttttatcaatggtaacgcaagttatttgggttaacatgtttttgagaaagatgttgaaggtagtggatgttaaaagattctttctcataatt |
4002041 |
T |
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| Q |
227 |
tcacggttcagagaaaaaagtatggttcttatgtctagac |
266 |
Q |
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| T |
4002042 |
tcatggtttagagaaaaaagtatggttcttatgcctagac |
4002081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 98 - 250
Target Start/End: Original strand, 32723299 - 32723453
Alignment:
| Q |
98 |
ggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttatttgggtta--acgggctttttagaaaggggttgaaggt |
195 |
Q |
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| T |
32723299 |
ggtttacaggtttagtagagaaacagtaatttttgttttatattaatggtgacacaagttatttgagttataacatgtttttgagaaaggtgttgaaggt |
32723398 |
T |
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| Q |
196 |
agtggatgttaaaagattctttctcagcatttcacggttcagagaaaaaagtatg |
250 |
Q |
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| T |
32723399 |
agtggatgttacaagattctttatcagcatttcatggttcagatgaaaaagtatg |
32723453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 102 - 250
Target Start/End: Original strand, 15720028 - 15720179
Alignment:
| Q |
102 |
tacatgtttattagagaaagagtaattttt-gttttgtatcaatggtgacacaagttatttgggtta--acgggctttttagaaaggggttgaaggtagt |
198 |
Q |
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| T |
15720028 |
tacaggtttagtagagaaagagtaattttttgttttgtattaatggtgacacaagttatttgggttataacaagtttttgagaaaggtgttgaaggtagt |
15720127 |
T |
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| Q |
199 |
ggatgttaaaagattctttctcagcatttcacggttcagagaaaaaagtatg |
250 |
Q |
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| T |
15720128 |
ggatgttacaagattctttctcagtatttcatggttcagatgaaaaagtatg |
15720179 |
T |
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