View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_7 (Length: 546)
Name: NF9388_low_7
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 94 - 317
Target Start/End: Complemental strand, 23180640 - 23180403
Alignment:
| Q |
94 |
tttgctttctagtccggtaaacaaataggcaaagcagtaaaagaaatagtagaaatgagatcaaaataacaattactagtagattcctcttcctgtttcc |
193 |
Q |
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| T |
23180640 |
tttgctttctagtccggtaaacaaataggcaaaccagtacaagaaatagtagaaatgagatcaaaataacaattacaagtagattcctcttcccgtttcc |
23180541 |
T |
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| Q |
194 |
atgccttccaattgcattagaatctaaacaagagaattgtcaattagcaaaattc-----ttcattgc--------aattactttggt-tccattgtata |
279 |
Q |
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| T |
23180540 |
atgtcttccaattgcattagaatctgaaaaggagaattatcaattagcaaaatacttccattcattccaatgatttaattagtttggtgttcattgtata |
23180441 |
T |
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| Q |
280 |
ttcctttaaatgatgacattaatcatgtaggaaagaaa |
317 |
Q |
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| T |
23180440 |
ttcctttaaatgatgtcattaatcatgtatgaaagaaa |
23180403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 94 - 244
Target Start/End: Complemental strand, 23188825 - 23188675
Alignment:
| Q |
94 |
tttgctttctagtccggtaaacaaataggcaaagcagtaaaagaaatagtagaaatgagatcaaaataacaattactagtagattcctcttcctgtttcc |
193 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
23188825 |
tttgctttctagttcggtaaacaaataggcaaagcagtaaaagaaatagtagaaatgagatcaaaataacaattataagtagattcctcttcccgtttcc |
23188726 |
T |
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| Q |
194 |
atgccttccaattgcattagaatctaaacaagagaattgtcaattagcaaa |
244 |
Q |
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| T |
23188725 |
ttgtcttccaattgcattagaatctgaagaagagaattgtcaattagcaaa |
23188675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 21181170 - 21181285
Alignment:
| Q |
94 |
tttgctttctagtccggtaaacaaataggcaaagcagtaaaagaaatagtagaaatgagatcaaaataacaattactagtagattcctcttcctgtttcc |
193 |
Q |
| |
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||||||||||||||| ||||||||||| | || ||||| ||| |||| |||||||||||||||| || |||||| | ||||||||||||||||||| | |
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| T |
21181170 |
tttgctttctagtccagtaaacaaataaaccaatcagtataagcaatattagaaatgagatcaaagtagcaattagaattagattcctcttcctgttttc |
21181269 |
T |
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| Q |
194 |
atgccttccaattgca |
209 |
Q |
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||| ||||||| |||| |
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| T |
21181270 |
atgtcttccaactgca |
21181285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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