View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_70 (Length: 285)
Name: NF9388_low_70
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 29442391 - 29442311
Alignment:
| Q |
186 |
cttgattacgtgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttatt |
266 |
Q |
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| T |
29442391 |
cttgattacatgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttatt |
29442311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 29442580 - 29442464
Alignment:
| Q |
1 |
ccggtaagtatctccggcggaagatccgccattggaaggaaggaaggaaggttctagttagggt-------ttagggtttttcctttcttcctctccatg |
93 |
Q |
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| T |
29442580 |
ccggtaagtatctccggcggaagatccaccattggaaggaagg----aaggttctagttagggtttaggccttagggtttttcctttcttcctctccttg |
29442485 |
T |
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| Q |
94 |
tacgacccaaatgcaacacag |
114 |
Q |
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| T |
29442484 |
tacgacccaaatgcaacacag |
29442464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 29452572 - 29452537
Alignment:
| Q |
1 |
ccggtaagtatctccggcggaagatccgccattgga |
36 |
Q |
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| T |
29452572 |
ccggtaagtatctccggcggaagatccgccattgga |
29452537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 29452503 - 29452466
Alignment:
| Q |
34 |
ggaaggaaggaaggaaggttctagttagggtttagggt |
71 |
Q |
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| T |
29452503 |
ggaaggaaggaaggaaggttgtagctagggtttagggt |
29452466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 10354101 - 10354157
Alignment:
| Q |
26 |
ccgccattggaaggaaggaaggaaggttctagttagggtttagggtttttcctttctt |
83 |
Q |
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| T |
10354101 |
ccgccattgtaaggaaggaatgaaggttct-gctagggtttagggtttttcatttctt |
10354157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 10336751 - 10336785
Alignment:
| Q |
13 |
tccggcggaagatccgccattggaaggaaggaagg |
47 |
Q |
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| T |
10336751 |
tccggcggaagatccgccattgtaaggaaggaagg |
10336785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 9283390 - 9283343
Alignment:
| Q |
6 |
aagtatctccggcggaagatc---cgccattggaaggaaggaaggaag |
50 |
Q |
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| T |
9283390 |
aagtatgtccggcggaagatcggacgccattggaaggaaggaaggaag |
9283343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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