View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_8 (Length: 490)
Name: NF9388_low_8
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 218 - 474
Target Start/End: Original strand, 2220903 - 2221148
Alignment:
| Q |
218 |
ctatccactttatagctcgaagaagactccaattaagcctctccttccttccattccattccatgtgtttcatattctatattcgctactgagttgcagc |
317 |
Q |
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| T |
2220903 |
ctatccactttatagctcgaagaagactccaattaagcctctccttccttcc-----attccatgtgtttcatattctatattcgctactcagttgcagc |
2220997 |
T |
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| Q |
318 |
taccaacacttgtcatacataggcatgaagaaatcaattcaaattcaaacacaaccaacgtcatcaaaatctgatccatcaaggtttcatttcacatagt |
417 |
Q |
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| T |
2220998 |
taccaacacttgtcattaataggcatgaagaaatc------aattcaaacacaaccaacgtcatcaaaatctgctccatcaaggtttcatttcacatagt |
2221091 |
T |
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| Q |
418 |
caccaataggattgagctgccctccactcggccaatagacactacccgatctgatgt |
474 |
Q |
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| T |
2221092 |
caccaataggattgagctgccctccactcggccaacagacactacccgatctgatgt |
2221148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 2220458 - 2220600
Alignment:
| Q |
18 |
tgtttgttttaatgtttataattgattagttagacactcctcactctttcttgttagttaattcttttgaaagaagttctaaatctcaccattcatatat |
117 |
Q |
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| T |
2220458 |
tgtttgttttaatgtttataattgattagttggacactccttactctttcttgttagttaattcttttgaaagcagttctaaatctcaccattcatatat |
2220557 |
T |
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| Q |
118 |
aatggcagtgcagtgatgatttttctcacattactcatttgtg |
160 |
Q |
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| T |
2220558 |
aatggcagtgcagtgatgatttttctcacattactcatttgtg |
2220600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 2207464 - 2207522
Alignment:
| Q |
18 |
tgtttgttttaatgtttataattgattagttagacactcctcactctttcttgttagtt |
76 |
Q |
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| T |
2207464 |
tgtttgttttaatgtttataattgattggttggacactccttactctttcttgttagtt |
2207522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 2207623 - 2207682
Alignment:
| Q |
123 |
cagtgcagtgatgatttttctcacattactcatttgtgggttttactcttttgtgttaac |
182 |
Q |
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| T |
2207623 |
cagtgcagtgataatttttctcatgttactcatttgtgggattttctcttttgtggtaac |
2207682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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