View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_80 (Length: 252)
Name: NF9388_low_80
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_80 |
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| [»] scaffold0516 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 48033952 - 48033726
Alignment:
| Q |
18 |
agaagcaatggaggtaagaaacacagcatcacatcacaatctacagttcaccatgaactcaattatgacaaaacatcatttgtttccaattcataaacaa |
117 |
Q |
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| T |
48033952 |
agaagcaatggaggtaagaaacacaacatcacatcacaatctacagttcaccatgaactcaattatgacaaaacatcatttgtttccaattcataaacaa |
48033853 |
T |
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| Q |
118 |
aaactaccagcaaccaagatctgccatcagcacatctcaagccaccgcaaattaaaactcctctgccaccgtcctcgtcgcgctacaagatgaaccgccg |
217 |
Q |
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|||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
48033852 |
aaactaacagcaaccaagatttgccatcagcccatctcaagccaccgcaaattaaaactcctccgccaccgtcctcgtcgcgctacaacatgaaccgcca |
48033753 |
T |
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| Q |
218 |
tcatcaccgctcagtcaccaaccacca |
244 |
Q |
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||||||||||||||||||||||||||| |
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| T |
48033752 |
tcatcaccgctcagtcaccaaccacca |
48033726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0516 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: scaffold0516
Description:
Target: scaffold0516; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 98 - 244
Target Start/End: Complemental strand, 693 - 547
Alignment:
| Q |
98 |
tgtttccaattcataaacaaaaactaccagcaaccaagatctgccatcagcacatctcaagccaccgcaaattaaaactcctctgccaccgtcctcgtcg |
197 |
Q |
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| T |
693 |
tgtttccaatccataaacaaacactaacagcaaccaagatctgccatcagcccatctcaagccaccgcaatttaaaactcctcccccaccgtcctcttcg |
594 |
T |
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| Q |
198 |
cgctacaagatgaaccgccgtcatcaccgctcagtcaccaaccacca |
244 |
Q |
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| T |
593 |
cgctacaacatgaaccgccgtcatcaccgctcagtcaccaaccacca |
547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0516; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 750 - 698
Alignment:
| Q |
18 |
agaagcaatggaggtaagaaacacagcatcacatcacaatctacagttcacca |
70 |
Q |
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| T |
750 |
agaagcaatagaggtaagaaacacaacaacagatcacaatctacagttcacca |
698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 9774484 - 9774394
Alignment:
| Q |
18 |
agaagcaatggaggtaagaaacacagcatcacatcacaatctacagttcaccatgaactcaatt-atgacaaaacatcatttgtttccaat |
107 |
Q |
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| T |
9774484 |
agaagcactagaggtaagaaacacaacaacacatcaccatctacaattcacaatgaactcaattcatgacaagacatcatttgtttccaat |
9774394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 12048987 - 12048938
Alignment:
| Q |
154 |
tcaagccaccgcaaattaaaactcctctgccaccgtcctcgtcgcgctac |
203 |
Q |
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| T |
12048987 |
tcaagtcaccgcaaattaacactcatccgccatcgtcctcgtcgcgctac |
12048938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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