View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_82 (Length: 250)
Name: NF9388_low_82
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_82 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 40671891 - 40672022
Alignment:
| Q |
14 |
atggaagtcctctatttttgtcaagatgtttgcccaacattattcaaccactcctcccatatccgagatagcacactcgacttgcaaattaatcaacact |
113 |
Q |
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| T |
40671891 |
atggaagtcctctattgttgtcaagatgtttgcccaacattattcacccactccccccatatccgagatagcacactcgacttgcaaattaatcaacact |
40671990 |
T |
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| Q |
114 |
tatctaggaaagaccaaattaaccggatgcctccac |
149 |
Q |
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| T |
40671991 |
tatctaggaaagacca----aaccggatgcctccac |
40672022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 145 - 241
Target Start/End: Original strand, 40672085 - 40672181
Alignment:
| Q |
145 |
tccacacaaacatttccaccacgagattgataaatttggattgatcaaaatataaaatatccgaaccatacatagcactcaacattttgacctttgc |
241 |
Q |
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| T |
40672085 |
tccacacaaacatttccaccacgagattgataaatttggattgatcaaaatataaaatatccgaaccattcatagcactcaacattttgaccattgc |
40672181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 40665379 - 40665476
Alignment:
| Q |
144 |
ctccacacaaacatttccaccacgagattgataaatttggattgatcaaaatataaaatatccgaaccatacatagcactcaacattttgacctttgc |
241 |
Q |
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| T |
40665379 |
ctccacacaaacattcccaccacaagattgacaaattcggattgatcaaaatataaaatatccgaaccatacatagcactcaacattttgaccattgc |
40665476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 40664542 - 40664583
Alignment:
| Q |
45 |
gcccaacattattcaaccactcctcccatatccgagatagca |
86 |
Q |
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| T |
40664542 |
gcccaacattattcacccactccccccatatccgagatagca |
40664583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 40682397 - 40682450
Alignment:
| Q |
144 |
ctccacacaaacatttccaccacgagattgataaatttggattgatcaaaatat |
197 |
Q |
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| T |
40682397 |
ctccacataaacctttcccccacaagattgataaattcggattgatcaaaatat |
40682450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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