View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9388_low_92 (Length: 240)
Name: NF9388_low_92
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_92 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 6804089 - 6804187
Alignment:
| Q |
97 |
aattgagattcctcatggagaatataccttaacgaaaaaagttatctttggttgggatgtggttgcgaaaaagacgccaagcaaataaagagactttaa |
195 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
6804089 |
aattaagattcctcatggagaatatacctcaacggaaaaagttatctttggttgggatgtggttgcgaaaaaggcgtcaagcaaataaagagattttaa |
6804187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 10365884 - 10365927
Alignment:
| Q |
197 |
gtctgtttggtagaggagaaaaaggggagagaggttgaagagag |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10365884 |
gtctgtttggtagaggagaaaaaggggagagaggttgaagagag |
10365927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 10914287 - 10914255
Alignment:
| Q |
197 |
gtctgtttggtagaggagaaaaaggggagagag |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
10914287 |
gtctgtttggtagaggagaaaaaggggagagag |
10914255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 28884814 - 28884856
Alignment:
| Q |
200 |
tgtttggtagaggagaaaaaggg--gagagaggttgaagagag |
240 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28884814 |
tgtttggtagaggagaaaaaggggagagagaggttgaagagag |
28884856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 12844891 - 12844936
Alignment:
| Q |
197 |
gtctgtttggtagaggagaaaaaggg--gagagaggttgaagagag |
240 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
12844891 |
gtctgtttgatagaggagaaaaaggggagagagaggttgaagagag |
12844936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 43038643 - 43038684
Alignment:
| Q |
200 |
tgtttggtagaggagaaaaaggg--gagagaggttgaagaga |
239 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43038643 |
tgtttggtagaggagaaaaaggggagagagaggttgaagaga |
43038684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 34841583 - 34841551
Alignment:
| Q |
197 |
gtctgtttggtagaggagaaaaaggggagagag |
229 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
34841583 |
gtctgtttggtagaggagaaaaaggagagagag |
34841551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 43277915 - 43277883
Alignment:
| Q |
197 |
gtctgtttggtagaggagaaaaaggggagagag |
229 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
43277915 |
gtctgtttggtagaggagaaaaaggagagagag |
43277883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University