View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9388_low_97 (Length: 235)
Name: NF9388_low_97
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_97 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 40671422 - 40671640
Alignment:
| Q |
13 |
gggtcacaggttaggacaagttgagagtgctaggaagtacctttgtttgtgacagacaggcatcaagttgtttttgttgagctaaaattggtttattttg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40671422 |
gggtcacaggttaggacaagttgagagtgctaggaagtacctttgtttgtgaca----ggcatcaagttgtttttgttgagctaaaattggtttattttg |
40671517 |
T |
|
| Q |
113 |
tttgtgactattgaattgaatgtccctggctttatgttgcggtcatgcaaattttctatggtagtggatagtgttaagtttttaggcttctttaataatg |
212 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40671518 |
tttgtgactattgaattgtatgtccctggctttatgttgtggtcatgcaaattttctatggtagtggatagtgttaagtttttaggcttctttaataatg |
40671617 |
T |
|
| Q |
213 |
aagaatttacactaattactaac |
235 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
40671618 |
aagaatttacactaattactaac |
40671640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 32333436 - 32333396
Alignment:
| Q |
18 |
acaggttaggacaagttgagagtgctaggaagtacctttgt |
58 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
32333436 |
acaggttaggacaagttgagaatgctaggaagcacctttgt |
32333396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University