View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388_low_98 (Length: 232)
Name: NF9388_low_98
Description: NF9388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388_low_98 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 21431359 - 21431209
Alignment:
| Q |
10 |
gagcagagattgtacacaaatcaaccatctcaaatgagagaaccaattaggatagtgatgggggcacacagatttccaagtgattgaatcatcaatcttc |
109 |
Q |
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| T |
21431359 |
gagcagagattgtacacaaatcaaccatctcaaatgagagaaccaattaggatagtgatgggggcacacagatttccaagtgattgaatcatcaatcttc |
21431260 |
T |
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| Q |
110 |
aacatatgaattatcactatcatgaatcatgaacaaaatataagtgtttac |
160 |
Q |
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| T |
21431259 |
aacatatgaattatcactatcatgaatcatgaacaaaatataagtgtttac |
21431209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 207
Target Start/End: Complemental strand, 21431191 - 21431162
Alignment:
| Q |
178 |
aaacaaaagatttgctcatgattttgttac |
207 |
Q |
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| T |
21431191 |
aaacaaaagatttgctcatgattttgttac |
21431162 |
T |
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