View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9389_high_3 (Length: 461)
Name: NF9389_high_3
Description: NF9389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9389_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 7 - 461
Target Start/End: Original strand, 44604445 - 44604900
Alignment:
| Q |
7 |
agaagcagagagaacaagcagagcgttttgatgcaatcaggaggcagctttgtaatcctggtgagatttgcattttattgctagtttgtacttctatatg |
106 |
Q |
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| T |
44604445 |
agaagcagagagaacaagcagagcgttttgatgcaatcaggaggcagctttgtaatcctggtgagatttgcattttattgctagtttgtacttctatata |
44604544 |
T |
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| Q |
107 |
cttggaatttgtgtaattacttgataccannnnnnngttgctaacactctgtatgtctccatagaagctgctaaaaatcaaactgtttcgaagcctgtgg |
206 |
Q |
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| T |
44604545 |
cttggaatttgtgtaattacttgataccatttttttgttgttaacactctgtatgtctccatagaagctgctaaaaatcaaactgtttcgaagcctgtgg |
44604644 |
T |
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| Q |
207 |
ctgaagaaactgaagatagagaagacgccaaagttgtggttgaggagaaaaacgaagagcacgatacacaacaggctgctgtgccttctaagccgagtga |
306 |
Q |
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| T |
44604645 |
ctgaagaaactgaagatagagaagacgccaaagttgtggttgaggagaaaaacgaagagcacgatacacaacaggctgctgtgccttctaggccgagtga |
44604744 |
T |
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| Q |
307 |
tagtaacctccggtcaccaatttgctgcatcatgggtcatgtggacgctggcaaaaccaagcttctggattgtattcgaggtacaaatgttcaagaaggt |
406 |
Q |
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| T |
44604745 |
tagtaacctccggtcaccaatttgctgcatcatgggtcatgtggacgctggcaaaaccaagcttctggattgtattcgaggtacaaatgttcaagaaggt |
44604844 |
T |
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| Q |
407 |
gaggctggtggtatcac-caacaaattggtgcaacttactttcctgccgagaacat |
461 |
Q |
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| T |
44604845 |
gaggctggtggtatcactcaacaaattggtgcaacttactttcctgccgagaacat |
44604900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 175 - 461
Target Start/End: Original strand, 44626378 - 44626665
Alignment:
| Q |
175 |
tgctaaaaatcaaactgtttcgaagcctgtggctgaagaaactgaagatagagaagacgccaaagttgtggttgaggagaaaaacgaagagcacgataca |
274 |
Q |
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| T |
44626378 |
tgctacaaataaacctgttacaaagcctgcagctgaagaaactgaagatagaaaacaggctaaagttgtggttgaggataaaaagaaaaagcacgatcca |
44626477 |
T |
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| Q |
275 |
caacaggctgctgtgccttctaagccgagtgatagtaacctccggtcaccaatttgctgcatcatgggtcatgtggacgctggcaaaaccaagcttctgg |
374 |
Q |
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| T |
44626478 |
caactgtcagccgtgccttctaagccgagtgaagggaaccttcggtcgccaatttgctgcatcatgggtcatgtggacactggcaaaaccaagcttctgg |
44626577 |
T |
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| Q |
375 |
attgtattcgaggtacaaatgttcaagaaggtgaggctggtggtatca-ccaacaaattggtgcaacttactttcctgccgagaacat |
461 |
Q |
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| T |
44626578 |
attgcattcgaggtaccaatgttcaagaaggtgaggctggtggtatcacccaacagattggtgcaacgtactttcctgctgagaacat |
44626665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 208 - 405
Target Start/End: Original strand, 182152 - 182349
Alignment:
| Q |
208 |
tgaagaaactgaagatagagaagacgccaaagttgtggttgaggagaaaaacgaagagcacgatacacaacaggctgctgtgccttctaagccgagtgat |
307 |
Q |
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| T |
182152 |
tgaagaaactcaagatagaaagcaggccaaagttgtggttgaggacaaaaagaaaaaccatgattcacaacactctgctgtgccttgtaagccgggtgat |
182251 |
T |
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| Q |
308 |
agtaacctccggtcaccaatttgctgcatcatgggtcatgtggacgctggcaaaaccaagcttctggattgtattcgaggtacaaatgttcaagaagg |
405 |
Q |
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| T |
182252 |
gggaacctacggtcgcctatttgctgcatcataggtgatgtcaacactggaaaaaccaagcttctgggtggtattcgaggtaacaattttcaagaagg |
182349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 406
Target Start/End: Complemental strand, 593876 - 593752
Alignment:
| Q |
282 |
ctgctgtgccttctaagccgagtgatagtaacctccggtcaccaatttgctgcatcatgggtcatgtggacgctggcaaaaccaagcttctggattgtat |
381 |
Q |
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| T |
593876 |
ctgctgttccttctaagccgagtgctgggaacctccggtcgcctatttgcagcatcatgggtgatgcatcctccggcaaaaccatgcttcttcattgtat |
593777 |
T |
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| Q |
382 |
tcgaggtacaaatgttcaagaaggt |
406 |
Q |
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| T |
593776 |
tcgaggtagtaatgttcaacaaggt |
593752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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