View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9389_low_1 (Length: 748)
Name: NF9389_low_1
Description: NF9389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9389_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 706; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 6 - 730
Target Start/End: Complemental strand, 36893400 - 36892675
Alignment:
| Q |
6 |
ggagaagcagagaccaataagtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtaca |
105 |
Q |
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| T |
36893400 |
ggagaagcagagaccgataagtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtaca |
36893301 |
T |
|
| Q |
106 |
gcgcttgctgtggcaaaggaaacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893300 |
gcgcttgctgtggcaaaggaaacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagac |
36893201 |
T |
|
| Q |
206 |
ctttgtgtgttttcttgaaaatttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctccaa |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36893200 |
ctttgtgtgttttcttgaaaatttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctccaa |
36893101 |
T |
|
| Q |
306 |
tttaacataaataaaaaataatcacatggatcaacttgtacaaacattttcacttggaagagataaagattatac-attttatgtacctgaaaccatttt |
404 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36893100 |
tttaacataaataaaaaataatcacatggatcaacttgtacaaacattttcacttggaagagataaagattatacaattttatgtacctgaaaccatttt |
36893001 |
T |
|
| Q |
405 |
atatcccacatcatttgcaaggcagaaccagcaatctgccaaggtttatcaccacctaatgcctctgctgccaaatgcaatactgtattctcatcctcat |
504 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36893000 |
atatcccacatcatttgcaaggcagaaccagcaatctgccaaggtttatcaccacctaatgcctcggctgccaaatgcaatactgtattctcatcctcat |
36892901 |
T |
|
| Q |
505 |
ccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcattctcaaggtctcaacaataagaggttgcctgtatttgactgcaacaag |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36892900 |
ccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcattctcaaggtctcaacaataagaggttgcctgtatttgactgcaacaag |
36892801 |
T |
|
| Q |
605 |
caatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccatttcaactattccattttttgctgcaacc |
704 |
Q |
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| T |
36892800 |
caatacattttcttttcttgaggtagtgttatgaatggcacttggtacttttattagaatttcgttaaccatttcaactattccattttttgctgcaacc |
36892701 |
T |
|
| Q |
705 |
aaaaatggtgtcatctttttcttgat |
730 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
36892700 |
aaaaatggtgtcatctttttcttgat |
36892675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 385 - 716
Target Start/End: Complemental strand, 36881936 - 36881599
Alignment:
| Q |
385 |
tatgtacctgaaaccattttatatcccacatcatttgcaaggcagaaccagcaatctgccaaggtttatcaccacctaatgcctctgctgccaaatgcaa |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||| |
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| T |
36881936 |
tatgtacctgaaaccattttatatcccacatcatttgtaaggcagaaccagcaatctgccaaggtttaccatcacctagtgcctttgctgccaaatgcaa |
36881837 |
T |
|
| Q |
485 |
tactgtattctcatcctcatccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcatt------ctcaaggtctcaacaataaga |
578 |
Q |
| |
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|| ||||||||| |||| ||||||||||||||| || ||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| |
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| T |
36881836 |
tattgtattctcctccttatccattgcaagaattaagttattccaaagttctggttttgagtgcttaatcattctcattctcaatgtctcaacaataacg |
36881737 |
T |
|
| Q |
579 |
ggttgcctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccattt |
678 |
Q |
| |
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||||| || | || ||||||||| |||||||||||||||| |||||| | |||| ||||||||||||||| ||||| ||||| ||||||||||| || |
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| T |
36881736 |
ggttgtcttgacttcactgcaacatgcaatacattttctttccttgagtttgtgtcatgaatggcacttggaattttgtctagaaattcgttaaccagtt |
36881637 |
T |
|
| Q |
679 |
caactattccattttttgctgcaaccaaaaatggtgtc |
716 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
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| T |
36881636 |
caactattccatttttcgctgcaaccaaaaatggtgtc |
36881599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 7 - 305
Target Start/End: Complemental strand, 36883396 - 36883098
Alignment:
| Q |
7 |
gagaagcagagaccaataagtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacag |
106 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||| | || ||||||||||||||||||||||| || || |||| ||| ||||||||||||||||| |
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| T |
36883396 |
gagaagcaaagaccgataagtgaagaaatggcaaaggcgtcaaatgcaggcttgccttctaatactggactgccttcatcggttgtgccgccaggtactt |
36883297 |
T |
|
| Q |
107 |
cgcttgctgtggcaaaggaaacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacc |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| || ||||||||||| || |||||||||||||| ||| || |||| ||||||| |
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| T |
36883296 |
ggcttgctgtggcaaaggaaacaccggctacaaggccagatacgacggagcaggattctgacgtgtcttttagccaactgctgctctcttgtataagatt |
36883197 |
T |
|
| Q |
207 |
tttgtgtgttttcttgaaaatttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctccaa |
305 |
Q |
| |
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|| ||||||| ||||||||||||| |||||||||||||| || ||||| |||| || |||||||||||| |||||||||||||| ||||||||||| |
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| T |
36883196 |
ttcgtgtgttgtcttgaaaatttcacttgatgttttgcccttgttgttgcttctaaagtagaagtgttgtggtacaaggcttttgatatactgctccaa |
36883098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 36903168 - 36902908
Alignment:
| Q |
40 |
aagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaaggaaacaccagctacaa |
139 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||||||| | ||||||| ||||||||||| || |||| ||||| |||||| ||||||| |||| |
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| T |
36903168 |
aagacattgaatgcaggattgccttctaatactggtctaccct---cagttgttccgccaggtactgcacttgttgtggtgaaggaagcaccagcgacaa |
36903072 |
T |
|
| Q |
140 |
gggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaaatttctcttgatgt |
239 |
Q |
| |
|
| || | |||||| |||||||| || | ||||| |||||||||||| | ||||||||||||||||||| |||| || |||||| || | | | ||| |
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| T |
36903071 |
gcgcggctacaaccgagcaggaatctgctgtgttttttagccattcattgctgtcttttataagaccttcatgtgattccttgaagatattttcagctgt |
36902972 |
T |
|
| Q |
240 |
tttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctcc |
303 |
Q |
| |
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|||||| || ||||| || | ||| ||||||| |||||||||||||||||| ||||||||| |
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| T |
36902971 |
tttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgatatactgctcc |
36902908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 385 - 534
Target Start/End: Complemental strand, 36902141 - 36901989
Alignment:
| Q |
385 |
tatgtacctgaaaccattttatatcccacatcatttgcaaggcagaaccagcaat---ctgccaaggtttatcaccacctaatgcctctgctgccaaatg |
481 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || ||||| | |||||| ||| | |||||||||| || || |||||||||||||||||| |
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| T |
36902141 |
tatgtacctgaaaccatttcatatcccacatcatttgtaatgcagacctagcaatattctgtccaggtttatcaacagcttgtgcctctgctgccaaatg |
36902042 |
T |
|
| Q |
482 |
caatactgtattctcatcctcatccattgcaagaatcaaattattccaaagtt |
534 |
Q |
| |
|
||||| |||||||| | |||||| ||||||||| ||| |||||||||||| |
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| T |
36902041 |
caatattgtattctgcttatcatcctttgcaagaaccaagctattccaaagtt |
36901989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 714
Target Start/End: Complemental strand, 36901846 - 36901716
Alignment:
| Q |
584 |
cctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccatttcaact |
683 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| |||||| |||| || | | |||| ||||| || ||||||||||| || ||||||||| | |
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| T |
36901846 |
cctgtattctactgcaacaagcaatacattttgtttgcttgagttagtactacggagggcagttggtgcttcgattagaatttctttcaccatttcatat |
36901747 |
T |
|
| Q |
684 |
attccattttttgctgcaaccaaaaatggtg |
714 |
Q |
| |
|
|| |||||| | ||||||||||||| ||||| |
|
|
| T |
36901746 |
atgccatttctagctgcaaccaaaattggtg |
36901716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 389 - 435
Target Start/End: Complemental strand, 23278879 - 23278833
Alignment:
| Q |
389 |
tacctgaaaccattttatatcccacatcatttgcaaggcagaaccag |
435 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
23278879 |
tacctgaaaccattttatatgccacatcatttgcaaggcagcaccag |
23278833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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