View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9389_low_11 (Length: 402)
Name: NF9389_low_11
Description: NF9389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9389_low_11 |
 | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0897 (1 HSPs) |
| | |
|
| [»] scaffold0304 (2 HSPs) |
| | |
|
| [»] scaffold0319 (2 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 10787410 - 10787017
Alignment:
| Q |
1 |
tctgcattttaaggtgtacccagttcatgctggaccctgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgac |
100 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| ||||||||||||| | |||||||||||| |
|
|
| T |
10787410 |
tctgcattctgaggtgtacccagttcatgctagaccctgagccctgcattcctaccgtccaaggcttgttgcagaatgctatggacgctggctctgtgac |
10787311 |
T |
|
| Q |
101 |
cgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10787310 |
cgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaaaaaac |
10787211 |
T |
|
| Q |
201 |
gttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtc |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
10787210 |
gttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattactgcctcctcagttggttcgccgtc |
10787111 |
T |
|
| Q |
301 |
gattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctgaggacgagcaatatgatgtcca |
394 |
Q |
| |
|
|||| || || |||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
10787110 |
gattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatctcca |
10787017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 14688383 - 14688776
Alignment:
| Q |
1 |
tctgcattttaaggtgtacccagttcatgctggaccctgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgac |
100 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
14688383 |
tctgcattttgaggtgcacccagttcatgctggaccctgagccctgcatccctaccatccaaggtttgttgaagaatgccatggatgctggctctgtgac |
14688482 |
T |
|
| Q |
101 |
cgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaac |
200 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||| ||||| ||| || |||| |||||| ||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
14688483 |
cgccctgtatttcgacgtgctgctgagggcgcttgacggtatcacacctgataccgctacactttttcatgatttttggtctcttttggagacaagaaac |
14688582 |
T |
|
| Q |
201 |
gttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtc |
300 |
Q |
| |
|
|| ||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||| || |||| |
|
|
| T |
14688583 |
gtcgcgcgctatcgcagagatataacgggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattactgcctcctcggttggtccgtcgtc |
14688682 |
T |
|
| Q |
301 |
gattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctgaggacgagcaatatgatgtcca |
394 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
14688683 |
gattctgcaacaactggcacaactggcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggatgagcaatatgatctcca |
14688776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 7360385 - 7360778
Alignment:
| Q |
1 |
tctgcattttaaggtgtacccagttcatgctggaccctgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgac |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||| | ||||| |||||||||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
7360385 |
tctgcattttgaggtgtacccagttcatgctggatcctgagccctgcgtccctaccatccaaggtttcttgaagaatgccatggatgctggctctgtgac |
7360484 |
T |
|
| Q |
101 |
cgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaac |
200 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||| ||||||||| || |||| ||||| ||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
7360485 |
cgctctgtacttcgacgtactgctgagggcgcttgacggtgtcacacctgatgccgctgcactttttcatgatttcttgtctcttttggagacacgaaac |
7360584 |
T |
|
| Q |
201 |
gttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtc |
300 |
Q |
| |
|
|| ||||| ||||| ||||| |||||||||| ||||||| |||||| || |||||||||||||| || ||||||||||| ||||| || | || |||| |
|
|
| T |
7360585 |
gtcgcgcgctatcgtagagacataacaggcgtggacacctctttccgtttcgtttcaggctggtataaaagattactgcctcctcggttgatccgtcgtc |
7360684 |
T |
|
| Q |
301 |
gattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctgaggacgagcaatatgatgtcca |
394 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
7360685 |
gattctgcaacaactggcacaactgtcgcggggatgtattgagacgtaactatcgaggctatcaccctgctgaggatgagcaatatgatctcca |
7360778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 38 - 283
Target Start/End: Complemental strand, 10158154 - 10157909
Alignment:
| Q |
38 |
tgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaac |
137 |
Q |
| |
|
|||||| ||||||||||||||| | || | | |||||||||||||||| |||||| |||| ||| || ||||| |||||| || ||||||||||| || |
|
|
| T |
10158154 |
tgagccatgcattcctactgtcaagtattcgctcaagaatgctatggatgatggctccgtgagcgcgctttactttgatgtaatgttgagggcgcttgac |
10158055 |
T |
|
| Q |
138 |
ggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggaca |
237 |
Q |
| |
|
||| || | |||| || |||||| |||| || ||||||||||||||||| | || ||||||||||||||||| |||||||| || |||||| |
|
|
| T |
10158054 |
ggtatctctcctgatataactgaacttttcaatgacttttggtctcttttggagacgaagaatgttgcgcgttatcgcagggagataacgggaggggact |
10157955 |
T |
|
| Q |
238 |
cccgtttccgctttgtttcaggctggtacaagagattactgccccc |
283 |
Q |
| |
|
||| || ||||| ||||||||||||||||| || || |||||||| |
|
|
| T |
10157954 |
cccactttcgcttcgtttcaggctggtacaaaaggttgctgccccc |
10157909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 1730228 - 1729835
Alignment:
| Q |
1 |
tctgcattttaaggtgtacccagttcatgctggaccctgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgac |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||||||||||| | |||||||||||| |
|
|
| T |
1730228 |
tctgcattttgaggtgtactcagttcatgctgtaccctgagccctgtattcctaccgtccaaggtttgctgaagaatgctatggacgctggctctgtgac |
1730129 |
T |
|
| Q |
101 |
cgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1730128 |
cgccctgtacttcgatgtactgctgagggtgcttaacgatgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaagaaac |
1730029 |
T |
|
| Q |
201 |
gttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtc |
300 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |||| ||||||| |
|
|
| T |
1730028 |
gtcgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtataagagattactgcctcctcagttggtccgccgtc |
1729929 |
T |
|
| Q |
301 |
gattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctgaggacgagcaatatgatgtcca |
394 |
Q |
| |
|
|||| ||||| |||||||| |||||| ||||||||||||||||||| ||||||||||| |||| || |||||||||||||||||||||| |||| |
|
|
| T |
1729928 |
gattttgcaataactggcacaactgtcacggggatggattgagacgcaactatcgaggttatcgccttgctgaggacgagcaatatgatctcca |
1729835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 22338584 - 22338640
Alignment:
| Q |
74 |
gaatgctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggc |
130 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| || ||||| ||||| |||||||||| |
|
|
| T |
22338584 |
gaatgctatggatgctggctctgtgagcgcgctctactttgatgtcatgctgagggc |
22338640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 14328914 - 14329307
Alignment:
| Q |
1 |
tctgcattttaaggtgtacccagttcatgctggaccctgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgac |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
14328914 |
tctgcattttgaggtgtacccagttcatgctggaccctgagccctgcatccctaccatctaaggtttgctgaagaatgccatggatgctggctctgtgac |
14329013 |
T |
|
| Q |
101 |
cgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaac |
200 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||| ||||| ||| || |||| |||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14329014 |
cgctctgtacttcgacgtactgctgagggcgcttgacggtatcacacctgatgccgctacactttttcatgatttctggtctcttttggagacacgaaac |
14329113 |
T |
|
| Q |
201 |
gttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtc |
300 |
Q |
| |
|
|| ||||| ||||||||||| ||||| || | |||||||||||||||||| |||||||||||||| || ||||||||||| ||||| || || | |||| |
|
|
| T |
14329114 |
gtcgcgcgctatcgcagagacataacgggtgtggacacccgtttccgcttcgtttcaggctggtataaaagattactgcctcctcggttgatttgtcgtc |
14329213 |
T |
|
| Q |
301 |
gattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctgaggacgagcaatatgatgtcca |
394 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
14329214 |
gattctgcaacaactggcacaactgtcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggatgagcaatatgatctcca |
14329307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 373
Target Start/End: Original strand, 18166551 - 18166922
Alignment:
| Q |
3 |
tgcattttaaggtgtacccagttcatgctggaccctgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgaccg |
102 |
Q |
| |
|
|||||||| || || || || ||||||||||| |||||| ||||||||||| ||| | ||||| | | ||| |||||||||| ||| |||||||||| |
|
|
| T |
18166551 |
tgcattttgagatgcactcaattcatgctggatgttgagccatgcattcctaccgtcaagcgtttgcttaggaacgctatggatgctggttctgtgaccg |
18166650 |
T |
|
| Q |
103 |
ccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaac-g |
201 |
Q |
| |
|
| || ||||| |||||| ||||||| |||||| ||||| ||| | |||| ||||| ||| || |||| || ||||||||||||||||||| ||| | |
|
|
| T |
18166651 |
ctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaactcttcaatgacttttggtctcttttggagacaaaaaaatg |
18166750 |
T |
|
| Q |
202 |
ttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcg |
301 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| ||| ||||||||| || ||||||||||||||| | || ||||| || | | || | ||||| |
|
|
| T |
18166751 |
ttgcgcgttatcgcagggagataacaggaggggactcccatttccgcttcgtctcaggctggtacaagcggttgctgcctccccagttaatttgtcgtcg |
18166850 |
T |
|
| Q |
302 |
attctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctga |
373 |
Q |
| |
|
|||||||||||||||||| || ||| || |||||| | || |||||||||||||| | ||| |||||||| |
|
|
| T |
18166851 |
attctgcaacaactggcacaattgtcgtggagatggactaaggcgtaactatcgagggtttcatcctgctga |
18166922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 24954962 - 24954578
Alignment:
| Q |
1 |
tctgcattttaaggtgtacccagttcatgctggaccctgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgac |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||| ||||| ||||| ||||||| ||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
24954962 |
tctgcattttgaggtgtacccagttcatgttggaccctgagccttgcatccctaccatccaaggcttgctgaagaatgccatggatgctggctctgtgac |
24954863 |
T |
|
| Q |
101 |
cgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaac |
200 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||| ||||| ||| || |||| |||||| ||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
24954862 |
cgctctgtacttcgacgtactgctgagggcgcttgacggtatcacacctgatgccgctacactttttcatgatttctggtctcttctggagacacgaaac |
24954763 |
T |
|
| Q |
201 |
gttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtc |
300 |
Q |
| |
|
|| ||||| ||||| |||| |||||||||| ||||||| |||||||||| |||||||||||||| || ||||||||||| |||||| || | || |||| |
|
|
| T |
24954762 |
gtcgcgcgatatcgtcgagacataacaggcgtggacacctgtttccgcttcgtttcaggctggtataaaagattactgcctcctcgattgatccgtcgtc |
24954663 |
T |
|
| Q |
301 |
gattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctgaggacgagcaatatgatgtcca |
394 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
24954662 |
gattctgcaaca---------actgtcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggataagcaatatgatctcca |
24954578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 38 - 373
Target Start/End: Original strand, 23621413 - 23621749
Alignment:
| Q |
38 |
tgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaac |
137 |
Q |
| |
|
|||||| ||||||||||| || || ||||| | | |||||||||||||| ||| ||||||||||| || ||||| |||||| ||||||| |||||| || |
|
|
| T |
23621413 |
tgagccatgcattcctaccgttaaacgtttgcttaggaatgctatggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgcttgac |
23621512 |
T |
|
| Q |
138 |
ggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggaca |
237 |
Q |
| |
|
||| ||| | ||| ||||| ||| || ||| || ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
23621513 |
ggtatcactcctgacaccgctgaactcttcattgacttttggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggggact |
23621612 |
T |
|
| Q |
238 |
cccgtttccgctttgtttcaggctggtacaagagattactgccccctcga-ctggttcgccgtcgattctgcaacaactggcataactgttacggggatg |
336 |
Q |
| |
|
||| ||||||||| |||||| ||||||||||||| || |||||||| | | | |||| ||||||||||||||||||||||| |||||| || |||| |
|
|
| T |
23621613 |
cccatttccgcttcgtttcatgctggtacaagaggttgctgccccccccagttaattcgtcgtcgattctgcaacaactggcacaactgtcgtggagatg |
23621712 |
T |
|
| Q |
337 |
gattgagacgtaactatcgaggctatcaccctgctga |
373 |
Q |
| |
|
|||| || || ||||||| ||| | ||| |||||||| |
|
|
| T |
23621713 |
gattaaggcgcaactatctagggtttcatcctgctga |
23621749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 373
Target Start/End: Original strand, 23195774 - 23196144
Alignment:
| Q |
3 |
tgcattttaaggtgtacccagttcatgctggaccctgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgaccg |
102 |
Q |
| |
|
|||||||| || || || || |||||||||||| |||||| ||||||||||| ||| | ||||| | | ||| ||||||||| ||| |||||||||| |
|
|
| T |
23195774 |
tgcattttgagatgcactcaattcatgctggacgttgagccatgcattcctaccgtcaagtgtttgcttaggaacactatggatgctggttctgtgaccg |
23195873 |
T |
|
| Q |
103 |
ccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaacgt |
202 |
Q |
| |
|
| || ||||| |||||| ||||||| |||||| ||||| ||| | |||| ||||| ||| || |||| || ||||||||||||||||||| ||| || |
|
|
| T |
23195874 |
ctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaactcttcaatgacttttggtctcttttggagacaaaaaatgt |
23195973 |
T |
|
| Q |
203 |
tgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcga |
302 |
Q |
| |
|
||||||||||||||| ||||||| ||| |||||| ||| |||||||||||| |||||||||| ||||| || |||| || | | | |||| |||||| |
|
|
| T |
23195974 |
tgcgcgttatcgcagggagataataggaggggactcccatttccgctttgtctcaggctggtttaagaggttgttgcctccccaattaattcgtcgtcga |
23196073 |
T |
|
| Q |
303 |
ttctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctga |
373 |
Q |
| |
|
||||||||||||||||| |||||| || |||||| | || || ||||||||||| | ||| |||||||| |
|
|
| T |
23196074 |
ttctgcaacaactggcacaactgtcgtggagatggactaaggcgcaactatcgagggtttcatcctgctga |
23196144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 373
Target Start/End: Complemental strand, 22643577 - 22643208
Alignment:
| Q |
3 |
tgcattttaaggtgtacccagttcatgctggaccctgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgaccg |
102 |
Q |
| |
|
|||||||| || || || || ||||||||||| |||||| |||||||||| |||| | ||||| | | ||| || ||||||| ||| |||||||||| |
|
|
| T |
22643577 |
tgcattttgagatgcactcaattcatgctggatgttgagccatgcattcctattgtcaagcgtttgcttaggaacgccatggatgctggttctgtgaccg |
22643478 |
T |
|
| Q |
103 |
ccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaacgt |
202 |
Q |
| |
|
| || ||||| |||||| ||||||| |||||| ||||| ||| ||||| ||||| ||| || |||| || ||||||||||||||||||| ||| || |
|
|
| T |
22643477 |
ctctttactttgatgtaatgctgagagcgcttgacggtatcatt-ttgataccgctgaactcttcaatgacttttggtctcttttggagacaaaaaatgt |
22643379 |
T |
|
| Q |
203 |
tgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcga |
302 |
Q |
| |
|
||||| ||||||||| |||| |||||| ||||| ||| ||||| ||| || | ||||||||||||||| || || || || | |||| |||||| |
|
|
| T |
22643378 |
tgcgcattatcgcagggagacaacaggaggggagtcccatttccacttcgtcttaggctggtacaagaggttgcttcctcccaagttaattcgtcgtcga |
22643279 |
T |
|
| Q |
303 |
ttctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctga |
373 |
Q |
| |
|
||||||||||||| ||| |||||| || |||||| | || || ||||||||||| | ||| |||||||| |
|
|
| T |
22643278 |
ttctgcaacaactagcacaactgtcttggagatggactaaggcgcaactatcgagggtttcatcctgctga |
22643208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 3 - 394
Target Start/End: Complemental strand, 22081225 - 22080833
Alignment:
| Q |
3 |
tgcattttaaggtgtacccagttcatgctggaccctgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgaccg |
102 |
Q |
| |
|
|||||||| || |||||||| || ||| |||| |||||| ||||||||||| ||| ||||||| | ||||| || ||||||| ||| |||||||||| |
|
|
| T |
22081225 |
tgcattttgagatgtacccaatttatgttggatattgagccatgcattcctaccgtcaaaggttttcttaagaacgccatggatgctggttctgtgaccg |
22081126 |
T |
|
| Q |
103 |
ccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaacgt |
202 |
Q |
| |
|
| || |||||||| |||||||||||||||||| | ||| ||| || |||| | ||| ||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22081125 |
ctctctacttcgacgtactgctgagggcgcttgatggtatcacacctgatactgctgaactctttcatgatttctggtctcttttggagacaagaaacgt |
22081026 |
T |
|
| Q |
203 |
tgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttca-ggctggtacaagagattactgccccctcgactggttcgccgtcg |
301 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| |||||||||||||| || | | ||||||||||||||||||||||| || | | | || ||||| |
|
|
| T |
22081025 |
cgcgcgctatcgcagggagataacaggcggggatacccgtttccgcttcgtctaatggctggtacaagagattactgcctccccagttaatccgtcgtcg |
22080926 |
T |
|
| Q |
302 |
attctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctgaggacgagcaatatgatgtcca |
394 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||| || ||||||||||| ||||| |||||||| || || ||||||||| |||| |
|
|
| T |
22080925 |
attctgcaacaactggcacaactgtcgcggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaatatgatctcca |
22080833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 41375361 - 41375532
Alignment:
| Q |
1 |
tctgcattttaaggtgtacccagttcatgctggaccctgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgac |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| | |||||||||||| |
|
|
| T |
41375361 |
tctgcattttgaggtgtacccagttcatgctggaccctgagccctgcattcctaccgtccaaggcttgctgaagaatgctatggacgctggctctgtgac |
41375460 |
T |
|
| Q |
101 |
cgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatga |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41375461 |
cgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatga |
41375532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 197 - 394
Target Start/End: Original strand, 41375532 - 41375729
Alignment:
| Q |
197 |
aaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgc |
296 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
41375532 |
aaacgtcgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaagagattactgcctccttagttggttcgc |
41375631 |
T |
|
| Q |
297 |
cgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctgaggacgagcaatatgatgtcca |
394 |
Q |
| |
|
|||||||| ||||| |||||| | |||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
41375632 |
cgtcgattttgcaataactggtacaactgtcacggggatggattgagacgcaactatcgaggttatcaccctgctgaggacgagcaatatgatctcca |
41375729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 22799785 - 22799844
Alignment:
| Q |
75 |
aatgctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggcgctt |
134 |
Q |
| |
|
||||||||||||| ||||||||||| ||| || ||||| ||||| |||||||||||||| |
|
|
| T |
22799785 |
aatgctatggatgctggctctgtgagcgcgctctactttgatgtcatgctgagggcgctt |
22799844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 39 - 376
Target Start/End: Complemental strand, 39128 - 38791
Alignment:
| Q |
39 |
gagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacg |
138 |
Q |
| |
|
||||| ||||||||||| ||| || ||||| | | ||| |||||||||| ||| ||||||||||| || ||||| |||||| ||||||| |||||| ||| |
|
|
| T |
39128 |
gagccatgcattcctaccgtcaaacgtttgcttaggaacgctatggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgcttgacg |
39029 |
T |
|
| Q |
139 |
gtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacac |
238 |
Q |
| |
|
|| ||| | |||| ||||| |||||| |||| || ||||||||||||||||| | ||| ||||||||||||||||| ||||||| ||| | ||| | |
|
|
| T |
39028 |
gtatcactcctgataccgctgaacttttcaatgacttttggtctcttttggagacgaaaaatgttgcgcgttatcgcagggagataataggagaggattc |
38929 |
T |
|
| Q |
239 |
ccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatgga |
338 |
Q |
| |
|
|| ||||||||| |||||||||||||||| || || |||||||||| | |||||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
38928 |
ccatttccgcttcatttcaggctggtacaaaaggttgctgccccctcagttaattcgccgtcgattctgcaacaactggcaaaactgccctggagatgga |
38829 |
T |
|
| Q |
339 |
ttgagacgtaactatcgaggctatcaccctgctgagga |
376 |
Q |
| |
|
| || || ||||||||||| | ||| ||||||||||| |
|
|
| T |
38828 |
ctaaggcgcaactatcgaggatttcatcctgctgagga |
38791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 39 - 376
Target Start/End: Original strand, 32610 - 32947
Alignment:
| Q |
39 |
gagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacg |
138 |
Q |
| |
|
||||| ||||||||||| ||| || ||||| | | ||| |||||||||| ||| ||||||||||| || ||||| |||||| ||||||| |||||| ||| |
|
|
| T |
32610 |
gagccatgcattcctaccgtcaaacgtttgcttaggaacgctatggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgcttgacg |
32709 |
T |
|
| Q |
139 |
gtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacac |
238 |
Q |
| |
|
|| ||| | |||| ||||| |||||| |||| || ||||||||||||||||| | ||| ||||||||||||||||| ||||||| ||| | ||| | |
|
|
| T |
32710 |
gtatcactcctgataccgctgaacttttcaatgacttttggtctcttttggagacgaaaaatgttgcgcgttatcgcagggagataataggagaggattc |
32809 |
T |
|
| Q |
239 |
ccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatgga |
338 |
Q |
| |
|
|| ||||||||| |||||||||||||||| || || |||||||||| | |||||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
32810 |
ccatttccgcttcatttcaggctggtacaaaaggttgctgccccctcagttaattcgccgtcgattctgcaacaactggcaaaactgccctggagatgga |
32909 |
T |
|
| Q |
339 |
ttgagacgtaactatcgaggctatcaccctgctgagga |
376 |
Q |
| |
|
| || || ||||||||||| | ||| ||||||||||| |
|
|
| T |
32910 |
ctaaggcgcaactatcgaggatttcatcctgctgagga |
32947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 373
Target Start/End: Complemental strand, 74688 - 74318
Alignment:
| Q |
3 |
tgcattttaaggtgtacccagttcatgctggaccctgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgaccg |
102 |
Q |
| |
|
|||||||| || || ||||| |||||||| || |||||| ||||||||||| ||| | |||| | ||||| |||||||||| ||| |||||||||| |
|
|
| T |
74688 |
tgcattttgagatgcacccaattcatgctagatgttgagccatgcattcctaccgtcaagcatttgcttaagaacgctatggatgctggttctgtgaccg |
74589 |
T |
|
| Q |
103 |
ccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaacgt |
202 |
Q |
| |
|
| || ||||| |||||| || |||| || ||| ||||| ||| || |||| ||||| ||| || |||| || ||||||||||||||||| | ||| || |
|
|
| T |
74588 |
ctctttactttgatgtaatggtgagagcacttgacggtatcacacctgataccgctgaactcttcaatgagttttggtctcttttggagacgaaaaatgt |
74489 |
T |
|
| Q |
203 |
tgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcga |
302 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||||||||||| ||||| || ||||||||||||||||| |||||||| || | | || |||||| |
|
|
| T |
74488 |
tgcgcgctatcgcagggagataacaggaggggacacccgttttcgcttcgtctcaggctggtacaagaggttactgcctcccaagttaatccgtcgtcga |
74389 |
T |
|
| Q |
303 |
ttctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgctga |
373 |
Q |
| |
|
||||||||||||||||| |||||| || |||||| | || |||||||| ||||| ||||| |||||||| |
|
|
| T |
74388 |
ttctgcaacaactggcacaactgtcgtggagatggactaaggcgtaactaccgagggtatcatcctgctga |
74318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 38 - 376
Target Start/End: Original strand, 14562190 - 14562533
Alignment:
| Q |
38 |
tgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaac |
137 |
Q |
| |
|
|||||| ||||||||||| ||| | ||||| | | |||||||||||| | ||||||||||| ||| || ||||| |||||| ||||||||||| || || |
|
|
| T |
14562190 |
tgagccatgcattcctaccgtcaagcgtttgcttaggaatgctatggacgctggctctgtgagcgctctttactttgatgtaatgctgagggcgattgac |
14562289 |
T |
|
| Q |
138 |
ggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggaca |
237 |
Q |
| |
|
||| ||| | |||| || || |||||| |||| || ||||||||||||||||| | ||| ||||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
14562290 |
ggtatcactcctgatgccactgaacttttcaatgacttttggtctcttttggagacgaaaaatgttgcgcgttatcgcagggagataataggaggggatt |
14562389 |
T |
|
| Q |
238 |
cccgtttccgctttgtttcaggctggtacaagagattactgccccctcgac-----tggttcgccgtcgattctgcaacaactggcataactgttacggg |
332 |
Q |
| |
|
||| ||||||||| ||||||||||||||||| || || |||||||| | | | |||||||||||||||||||||||||||| ||||| || |
|
|
| T |
14562390 |
cccatttccgcttcgtttcaggctggtacaaaaggttgctgccccccccccccagttaattcgccgtcgattctgcaacaactggcacaactgccctgga |
14562489 |
T |
|
| Q |
333 |
gatggattgagacgtaactatcgaggctatcaccctgctgagga |
376 |
Q |
| |
|
|||||| | || || ||||||||||| | ||| ||||||||||| |
|
|
| T |
14562490 |
gatggactaaggcgcaactatcgaggatttcatcctgctgagga |
14562533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 38 - 376
Target Start/End: Original strand, 13284332 - 13284670
Alignment:
| Q |
38 |
tgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaac |
137 |
Q |
| |
|
|||||| ||||||||||| ||| | ||||| | | ||| |||||||| | ||||||||||| ||| || ||||| |||||| |||||||||||||| || |
|
|
| T |
13284332 |
tgagccatgcattcctaccgtcaagcgtttgcttaggaacgctatggacgctggctctgtgagcgctctttactttgatgtaatgctgagggcgcttgac |
13284431 |
T |
|
| Q |
138 |
ggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggaca |
237 |
Q |
| |
|
||| ||| | |||| || || ||| || |||| || ||||||||||||||||| | || ||||| ||||||||||| |||||||| || |||||| |
|
|
| T |
13284432 |
ggtatcactcctgataccactgaactcttcaatgacttttggtctcttttggagacgaagaatgttgctcgttatcgcagggagataacgggaggggact |
13284531 |
T |
|
| Q |
238 |
cccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatgg |
337 |
Q |
| |
|
|| ||| ||||| |||||||||||||||||||| || |||||||| | |||| || |||||||||||||||||||| ||||| || ||||| |
|
|
| T |
13284532 |
cctattttcgcttcgtttcaggctggtacaagaggttgctgcccccctagttaattcgtcgccgattctgcaacaactggcacaactgccctggagatgg |
13284631 |
T |
|
| Q |
338 |
attgagacgtaactatcgaggctatcaccctgctgagga |
376 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
13284632 |
gttgagacgcaactatcgaggaattcatcctgctgagga |
13284670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 14741960 - 14742016
Alignment:
| Q |
78 |
gctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggcgctt |
134 |
Q |
| |
|
|||||||||| ||||||||||| ||| || ||||| ||||| |||||||||||||| |
|
|
| T |
14741960 |
gctatggatgctggctctgtgagcgcgctctactttgatgtcatgctgagggcgctt |
14742016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 38 - 376
Target Start/End: Complemental strand, 36203 - 35865
Alignment:
| Q |
38 |
tgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaac |
137 |
Q |
| |
|
|||||| ||||||||||||||| || ||||| | | |||||||||||| | ||| || || | ||| || ||||| |||||| |||||||||||||| || |
|
|
| T |
36203 |
tgagccatgcattcctactgtcaaacgtttgcttaggaatgctatggacgctggttccgtaaacgctctttactttgatgtaatgctgagggcgcttgac |
36104 |
T |
|
| Q |
138 |
ggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggaca |
237 |
Q |
| |
|
||| ||| | |||| | || ||| || |||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
36103 |
ggtatcactcctgatatcactgaactcttcaatgacttctggtctcttttggagacaaagaatgttgcgcgttatcgcagggagataacaggaggggact |
36004 |
T |
|
| Q |
238 |
cccgtttccgctttgtttcaggctggtacaagagattactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatgg |
337 |
Q |
| |
|
||| || ||||| |||||||||||||||||||| || ||||| || | | |||| || |||||||||||||||||||| ||||| | ||||| |
|
|
| T |
36003 |
cccactttcgcttcgtttcaggctggtacaagaggttgctgccgccccagttaattcgtcgccgattctgcaacaactggcacaactgccctagagatgg |
35904 |
T |
|
| Q |
338 |
attgagacgtaactatcgaggctatcaccctgctgagga |
376 |
Q |
| |
|
||||||| ||||||||||| | ||| ||||||||||| |
|
|
| T |
35903 |
gctgagacgcaactatcgagggtttcatcctgctgagga |
35865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 72 - 373
Target Start/End: Original strand, 3837 - 4138
Alignment:
| Q |
72 |
aagaatgctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatg |
171 |
Q |
| |
|
||||| || ||||||| ||| ||||||||||| || ||||| |||||| ||||||| ||||| |||| ||| | |||| ||||| ||| || ||| |
|
|
| T |
3837 |
aagaacgccatggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgctcgacggcatcactcctgataccgctgaactcttcaatg |
3936 |
T |
|
| Q |
172 |
atttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagag |
271 |
Q |
| |
|
| || ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||| ||| |||| ||||||| ||| |||||||||| || |
|
|
| T |
3937 |
acttttggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggggattcccatttctgctttgtctcatgctggtacaatag |
4036 |
T |
|
| Q |
272 |
attactgccccctcgactggttcgccgtcgattctgcaacaactggcataactgttacggggatggattgagacgtaactatcgaggctatcaccctgct |
371 |
Q |
| |
|
|| ||||| || || | ||||| ||| ||||||||||||||||||| |||||| || |||||| | ||||| ||||||||||| | ||| |||||| |
|
|
| T |
4037 |
gttgctgcctccccggttagttcgtcgttgattctgcaacaactggcacaactgtcgtggagatggactaagacgcaactatcgagggtttcatcctgct |
4136 |
T |
|
| Q |
372 |
ga |
373 |
Q |
| |
|
|| |
|
|
| T |
4137 |
ga |
4138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 74 - 325
Target Start/End: Original strand, 12276 - 12526
Alignment:
| Q |
74 |
gaatgctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgat |
173 |
Q |
| |
|
|||||||||||| | ||||||||||| ||| || ||||| ||||| |||||||||||||| ||| | ||| | |||| || || |||||| |||| |
|
|
| T |
12276 |
gaatgctatggacgctggctctgtgagcgctctttactttcatgtaatgctgagggcgcttgacgatatcactcctgataccactgaacttttcaatgac |
12375 |
T |
|
| Q |
174 |
ttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagat |
273 |
Q |
| |
|
|| ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| || || ||| |||| ||||||||| ||||||||||||||| | |
|
|
| T |
12376 |
ttttggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggcgattcccatttctgctttgttttaggctggtacaagaggt |
12475 |
T |
|
| Q |
274 |
tactgccccctcgactggttcgccgtcgattctgcaacaactggcataactg |
325 |
Q |
| |
|
| ||||||||| | | |||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
12476 |
tgctgccccctag-ttaattcgtcgtcgattctgaaacaactggcacaactg |
12526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 74 - 325
Target Start/End: Original strand, 18027 - 18277
Alignment:
| Q |
74 |
gaatgctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgat |
173 |
Q |
| |
|
|||||||||||| | ||||||||||| ||| || ||||| ||||| |||||||||||||| ||| | ||| | |||| || || |||||| |||| |
|
|
| T |
18027 |
gaatgctatggacgctggctctgtgagcgctctttactttcatgtaatgctgagggcgcttgacgatatcactcctgataccactgaacttttcaatgac |
18126 |
T |
|
| Q |
174 |
ttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagat |
273 |
Q |
| |
|
|| ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| || || ||| |||| ||||||||| ||||||||||||||| | |
|
|
| T |
18127 |
ttttggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggcgattcccatttctgctttgttttaggctggtacaagaggt |
18226 |
T |
|
| Q |
274 |
tactgccccctcgactggttcgccgtcgattctgcaacaactggcataactg |
325 |
Q |
| |
|
| ||||||||| | | |||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
18227 |
tgctgccccctag-ttaattcgtcgtcgattctgaaacaactggcacaactg |
18277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 75 - 325
Target Start/End: Complemental strand, 19584 - 19335
Alignment:
| Q |
75 |
aatgctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatt |
174 |
Q |
| |
|
||||||||||| | ||||||||||| ||| || ||||| |||||| | |||| |||| || ||||| ||| | |||| || || |||||| |||| | |
|
|
| T |
19584 |
aatgctatggacgctggctctgtgagcgctctttactttgatgtaattctgatggcgattgacggtatcactcctgatgccactgaacttttcaatgact |
19485 |
T |
|
| Q |
175 |
tctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggacacccgtttccgctttgtttcaggctggtacaagagatt |
274 |
Q |
| |
|
| ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||| ||| ||||| ||| |||||||||||||||||||| || |
|
|
| T |
19484 |
tttggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggggattcccatttccacttcgtttcaggctggtacaagaggtt |
19385 |
T |
|
| Q |
275 |
actgccccctcgactggttcgccgtcgattctgcaacaactggcataactg |
325 |
Q |
| |
|
|||||||| | | |||| ||||||||||||||||||||||| ||||| |
|
|
| T |
19384 |
gctgccccc-cagttaattcgtcgtcgattctgcaacaactggcacaactg |
19335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 13782 - 13680
Alignment:
| Q |
38 |
tgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaac |
137 |
Q |
| |
|
|||||| ||||||||||| ||| | ||||| | | |||||||||||| | ||||||||||| ||| || ||||| |||||| ||||||||||| || || |
|
|
| T |
13782 |
tgagccatgcattcctaccgtcaagcgtttgcttaggaatgctatggacgctggctctgtgagcgctctttactttgatgtaatgctgagggcgattgac |
13683 |
T |
|
| Q |
138 |
ggt |
140 |
Q |
| |
|
||| |
|
|
| T |
13682 |
ggt |
13680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 38 - 271
Target Start/End: Complemental strand, 28838 - 28605
Alignment:
| Q |
38 |
tgagccctgcattcctactgtccaaggtttgttgaagaatgctatggatgttggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaac |
137 |
Q |
| |
|
|||||| ||||||||||| ||| | ||||| | | ||| |||||||| | ||||||||| | ||| || ||||| |||||| |||||||||||||| || |
|
|
| T |
28838 |
tgagccatgcattcctaccgtcaagcgtttgcttaggaacgctatggacgctggctctgtaagcgctctttactttgatgtaatgctgagggcgcttgac |
28739 |
T |
|
| Q |
138 |
ggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaataaacgttgcgcgttatcgcagagagataacaggcggggaca |
237 |
Q |
| |
|
||| ||| | |||| || || ||| || ||| || ||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
28738 |
ggtatcactcatgataccactgaactcttcattgacttttggtctcttttggagacgaaaaatgttgcgcgttatcgcagggagataacaggaggggact |
28639 |
T |
|
| Q |
238 |
cccgtttccgctttgtttcaggctggtacaagag |
271 |
Q |
| |
|
||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
28638 |
cccattttcgcttcgtttcaggctggtacaagag |
28605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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