View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9389_low_13 (Length: 386)
Name: NF9389_low_13
Description: NF9389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9389_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 33001103 - 33000715
Alignment:
| Q |
1 |
taatctccactttgtaccctcaccatctccagtattttgtcagtcgcccgctgacggattatcatcaacatttgttagtttttaagactaggcttttctt |
100 |
Q |
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| T |
33001103 |
taatccccactttgtaccctctccatctctagtattttgtcagtcgcccgctgacggattatcatcaacatttgttagtttttaagcctaggattttctt |
33001004 |
T |
|
| Q |
101 |
ttaaactcatttggtct--tctacctctgtcagcattacggatgtaacaacataaagataagaaacaactataacatgctaaccacttgacgtgttgata |
198 |
Q |
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| T |
33001003 |
ttaaactcatttggtcttctctacctctgtcagccttaccggtgtaacaacataaagataaggaacaactataacatgctaaccacttgacgtgttgata |
33000904 |
T |
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| Q |
199 |
gtatcaactgtt------------------acaaaataatatgagaatagggattgagctcttcagggaatgggaacaatcacaaagtgtactcgagaca |
280 |
Q |
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| T |
33000903 |
gtatcaactgttgcatggtggaaataaagaacaaaataatatgagaatagggactgagcccttcagggaatgggaacaatcacaaggtgtactcgaggca |
33000804 |
T |
|
| Q |
281 |
ccttttctctcttaacaaaatggtttacttaaatgcctattgactatgtttcctaagctatttataaaataagctatacaactaggttg |
369 |
Q |
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| T |
33000803 |
ccttttctctcttaacagaatggtttacttaaatgcctattgactctgtttcctaagctatttataaaataagctatacaactaggttg |
33000715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 59 - 362
Target Start/End: Complemental strand, 7948905 - 7948583
Alignment:
| Q |
59 |
ttatcatcaacatttgttagtttttaagactaggcttttcttttaaactcatttggtcttctacctctgtcagcattacggatgtaacaacataaagata |
158 |
Q |
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||||||||||||||||| ||||| || ||||||||||||||| ||| ||||||||||||||||||| ||| | |||| | ||||| ||||||||||| |
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| T |
7948905 |
ttatcatcaacatttgtcagtttccaa-actaggcttttcttt-aaattcatttggtcttctacctccttcaaccttaccggtgtaaggacataaagata |
7948808 |
T |
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| Q |
159 |
agaaacaactataacatgctaaccacttgacgtgttgatagtatcaactgtt------------------acaaaataatatgagaatagggattgagct |
240 |
Q |
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|| |||||||||||||||||||| |||||| |||||| | ||||| |||| |||| | || ||||||||||||| ||||| |
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| T |
7948807 |
aggaacaactataacatgctaactacttgattagttgatggaatcaaatgttgcatgaaggaaaaagagaacaacagaacatgagaatagggactgagcc |
7948708 |
T |
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| Q |
241 |
cttcagggaatgggaacaatcacaaagtgtactcgagacaccttttctctcttaacaaaatggttta---cttaaatgcctattgactatgtttcctaag |
337 |
Q |
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| T |
7948707 |
cttcatggaatggaagcaatcacaaggtgtattcgaggcaccttttctctcttaacagaatgatttacttcttaaatgcctattgactctgtttcctaag |
7948608 |
T |
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| Q |
338 |
ctatttataaaataagctatacaac |
362 |
Q |
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| T |
7948607 |
ccatttataatgtaagctatacaac |
7948583 |
T |
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