View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9389_low_17 (Length: 360)
Name: NF9389_low_17
Description: NF9389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9389_low_17 |
 | |
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| [»] scaffold0106 (1 HSPs) |
| | |
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| [»] scaffold0437 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 20851287 - 20850944
Alignment:
| Q |
1 |
tcagattgtgttctcagtagggccgtacaggaagtaccaccccaacaatccagccaagcttcattacaaatggcacgatcgagacgcnnnnnnnctgaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
20851287 |
tcagattgtgttctcagtagggccgtacaggaagtgccaccccaacaatccagccaagcttcattacaaatggcacggtcgagacgcaaaaaaactgaat |
20851188 |
T |
|
| Q |
101 |
ctgtatctaagcggccgttgttccaagtatattgcacaccacttgtattgagatgaagtaacagattggcattagaccaagaaagaaagtcattacaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20851187 |
ctgtatctaagcggccgttgttccaagtatattgtacaccgtttgtattcagatgaagtaacagattggcattagaccaagaaagaaagtcattacaaga |
20851088 |
T |
|
| Q |
201 |
taaagattgaggaagacgtctgcccctcttctcatgagcccctagaaccgcattaaaatccccaacaaatatccaaggagctataaaattattttgcaac |
300 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
20851087 |
taaagattgaggcagacgtcgacccctcttctcatgagcccctagaaccgcattaaaatccccaacaaagatccaaggagctataaaattattttgcaac |
20850988 |
T |
|
| Q |
301 |
atagttagatcagcccataattgtctgcgtaaaatatatgatgt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20850987 |
atagttagatcagcccataattgtctgcgtaaaagatatgatgt |
20850944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 317
Target Start/End: Complemental strand, 26694343 - 26694131
Alignment:
| Q |
105 |
atctaagcggccgttgttccaagtatattgcacaccacttgtattgagatgaagtaacagattggcattagaccaagaaagaaagtcattacaagataaa |
204 |
Q |
| |
|
|||||| | ||| |||||||||||| |||| || ||| ||||||| ||||| | ||| | ||||||||| ||||||| |||||| || ||||||| | | |
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|
| T |
26694343 |
atctaacctgccattgttccaagtaaattgtaccccatttgtattcagatgtaataataaattggcattggaccaagcaagaaaatccgtacaagaaata |
26694244 |
T |
|
| Q |
205 |
gattgaggaagacgtctgcccctcttctcatgagcccctagaaccgcattaaaatccccaacaaatatccaaggagctataaaattattttgcaacatag |
304 |
Q |
| |
|
|| |||| ||||| | ||||| ||||||||||| || | || |||||||||||||| ||||| ||||| ||||| | ||||||| || | ||| | |
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|
| T |
26694243 |
gagggagggagacgacgtccccttttctcatgagcacccaagacggcattaaaatcccccacaaaaatccacggagcgacgtaattattctggagcattg |
26694144 |
T |
|
| Q |
305 |
ttagatcagccca |
317 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26694143 |
ttagatcagccca |
26694131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 317
Target Start/End: Complemental strand, 26964075 - 26963863
Alignment:
| Q |
105 |
atctaagcggccgttgttccaagtatattgcacaccacttgtattgagatgaagtaacagattggcattagaccaagaaagaaagtcattacaagataaa |
204 |
Q |
| |
|
|||||| | ||| |||||||||||| |||| || ||| ||||||| ||||| | ||| | ||||||||| ||||||| |||||| || ||||||| | | |
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|
| T |
26964075 |
atctaacctgccattgttccaagtaaattgtaccccatttgtattcagatgtaataataaattggcattggaccaagcaagaaaatccgtacaagaaata |
26963976 |
T |
|
| Q |
205 |
gattgaggaagacgtctgcccctcttctcatgagcccctagaaccgcattaaaatccccaacaaatatccaaggagctataaaattattttgcaacatag |
304 |
Q |
| |
|
|| |||| ||||| | ||||| ||||||||||| || | || |||||||||||||| ||||| ||||| ||||| | ||||||| || | ||| | |
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|
| T |
26963975 |
gagggagggagacgacgtccccttttctcatgagcacccaagacggcattaaaatcccccacaaaaatccacggagcgacgtaattattctggagcattg |
26963876 |
T |
|
| Q |
305 |
ttagatcagccca |
317 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26963875 |
ttagatcagccca |
26963863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 21735797 - 21735829
Alignment:
| Q |
247 |
accgcattaaaatccccaacaaatatccaagga |
279 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
21735797 |
accgcattaaaatccccaacaaataaccaagga |
21735829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 22024904 - 22025247
Alignment:
| Q |
1 |
tcagattgtgttctcagtagggccgtacaggaagtaccaccccaacaatccagccaagcttcattacaaatggcacgatcgagacgcnnnnnnnctgaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
22024904 |
tcagattgtgttctcagtagggccgtacaggaagtaccaccccaacaatccagccaagcttcattacaaatggcacggtcgagacgcaaaaaaactgaat |
22025003 |
T |
|
| Q |
101 |
ctgtatctaagcggccgttgttccaagtatattgcacaccacttgtattgagatgaagtaacagattggcattagaccaagaaagaaagtcattacaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22025004 |
ctgtatctaagcggccgttgttccaagtatattgtacaccttttgtattcagatgaagtaacagattggcattagaccaagaaagaaagtcattacaaga |
22025103 |
T |
|
| Q |
201 |
taaagattgaggaagacgtctgcccctcttctcatgagcccctagaaccgcattaaaatccccaacaaatatccaaggagctataaaattattttgcaac |
300 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
22025104 |
taaagattgaggcagacgtcgacccctcttctcatgagcccctagaaccgcattaaaatccccaacaaagatccaatgagctataaaattattttgcaac |
22025203 |
T |
|
| Q |
301 |
atagttagatcagcccataattgtctgcgtaaaatatatgatgt |
344 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22025204 |
atagttagatcagcccataattgtctgtgtaaaatatatgatgt |
22025247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 32134992 - 32135068
Alignment:
| Q |
229 |
ttctcatgagcccctagaaccgcattaaaatccccaacaaatatccaaggagctataaaattattttgcaacatagt |
305 |
Q |
| |
|
|||||||||||||||| ||| ||| | ||||||| ||||| ||||| ||||| | |||||||||||| | |||||| |
|
|
| T |
32134992 |
ttctcatgagcccctaaaacggcaatgaaatcccgcacaaagatccatggagccacaaaattattttgaagcatagt |
32135068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 317
Target Start/End: Original strand, 22835044 - 22835256
Alignment:
| Q |
105 |
atctaagcggccgttgttccaagtatattgcacaccacttgtattgagatgaagtaacagattggcattagaccaagaaagaaagtcattacaagataaa |
204 |
Q |
| |
|
|||||| | ||| |||||||||||| |||| || ||| ||||||| ||||| | ||| | ||||||||| ||||||| |||||| || ||||||| | | |
|
|
| T |
22835044 |
atctaacctgccattgttccaagtaaattgtaccccatttgtattcagatgtaataataaattggcattggaccaagcaagaaaatccgtacaagaaaga |
22835143 |
T |
|
| Q |
205 |
gattgaggaagacgtctgcccctcttctcatgagcccctagaaccgcattaaaatccccaacaaatatccaaggagctataaaattattttgcaacatag |
304 |
Q |
| |
|
|| |||| ||||| | ||||| ||||||||||| || | || |||||||||||||| ||||| ||||| ||||| | ||||||| || | ||| | |
|
|
| T |
22835144 |
gagggagggagacgacgtccccttttctcatgagcacccaagacggcattaaaatcccccacaaaaatccacggagcgacgtaattattctggagcattg |
22835243 |
T |
|
| Q |
305 |
ttagatcagccca |
317 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22835244 |
ttagatcagccca |
22835256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0106 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0106
Description:
Target: scaffold0106; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 263
Target Start/End: Complemental strand, 23419 - 23277
Alignment:
| Q |
121 |
ttccaagtatattgcacaccacttgtattgagatgaagtaacagattggcattagaccaagaaagaaagtcattacaagataaagattgaggaagacgtc |
220 |
Q |
| |
|
||||||||| ||||||| ||| ||||||| | ||| | || ||||| ||||||||||||| ||||||||| | ||||| | ||| |||||||||| | |
|
|
| T |
23419 |
ttccaagtaaattgcaccccatttgtattcaaatgccgcaagagattagcattagaccaagtaagaaagtcggtgcaagaaatagaaggaggaagacggc |
23320 |
T |
|
| Q |
221 |
tgcccctcttctcatgagcccctagaaccgcattaaaatcccc |
263 |
Q |
| |
|
|| || || |||||||| |||| ||||||||||||||||| |
|
|
| T |
23319 |
gacctcttttttcatgagcacctaacaccgcattaaaatcccc |
23277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0437 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0437
Description:
Target: scaffold0437; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 7940 - 7908
Alignment:
| Q |
247 |
accgcattaaaatccccaacaaatatccaagga |
279 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
7940 |
accgcattaaaatccccaacaaataaccaagga |
7908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 13220428 - 13220368
Alignment:
| Q |
223 |
cccctcttctcatgagcccctagaaccgcattaaaatccccaacaaatatccaaggagcta |
283 |
Q |
| |
|
|||| |||||||||||| |||| || ||||||||| ||||| ||||| |||||||| |||| |
|
|
| T |
13220428 |
ccccacttctcatgagcacctaaaatcgcattaaagtcccccacaaaaatccaaggtgcta |
13220368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 12686082 - 12686114
Alignment:
| Q |
54 |
ccaagcttcattacaaatggcacgatcgagacg |
86 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
12686082 |
ccaagcttcattacaaatagcacgatcgagacg |
12686114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 21491715 - 21491759
Alignment:
| Q |
235 |
tgagcccctagaaccgcattaaaatccccaacaaatatccaagga |
279 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| | ||||||| |
|
|
| T |
21491715 |
tgagccccgagcaccgcattaaaatccccaacaaacaaccaagga |
21491759 |
T |
|
Back To:
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