View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9389_low_2 (Length: 535)
Name: NF9389_low_2
Description: NF9389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9389_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 12 - 375
Target Start/End: Original strand, 52329901 - 52330265
Alignment:
| Q |
12 |
tgttataaacaacaagccgctttcggaggcggtgttggagaccatgattggagaaattcctgtttcccctgctttgaaagagagtttggctacaagattt |
111 |
Q |
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| T |
52329901 |
tgttataaacaacaagccactttcagaggcagtgttggagaccatgattggagaaattcctgtttcccctgctttgaaagagagtttggctacaagattt |
52330000 |
T |
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| Q |
112 |
tatgagtttatgaagattgacaacttcaacatttgaaactgataattataagcagtcgtctttgatcttgaaggcgaggtgatctttgatgcaagatata |
211 |
Q |
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| T |
52330001 |
tatgagtttatgaagattgacaacttcaacatttgaaacttataattataagcagtcgtctttgatcttgaaggcgaggtgatctttgatgcaagatata |
52330100 |
T |
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| Q |
212 |
atggacacatagtccatgtgaaat----ctataagtcatatagatttaatgttagtacttttttgaattaattctcccagcactttttgtggacttggta |
307 |
Q |
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| T |
52330101 |
atggacacatagtccatgtgaaatataattataagtc--atagatttaatgttagtacttttttgaattaattcttccagcac--tttgtggacttggta |
52330196 |
T |
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| Q |
308 |
cgtcattatttaaaatgacgg-gttagttattcctggttgttttttcacgtgtttgtgcatcatttatg |
375 |
Q |
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| T |
52330197 |
cgtcattatttaaaatgacggatttagttatttctggttgttttttcacgtgtttgtgcatcatttatg |
52330265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 52325473 - 52325616
Alignment:
| Q |
12 |
tgttataaacaacaagccgctttcggaggcggtgttggagaccatgattggagaaattcctgtttcccctgctttgaaagagagtttggctacaagattt |
111 |
Q |
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| T |
52325473 |
tgttataaacaacaagccgctttcggaagcagtgttggagaccatgattggagaaatccctgtttcccctgctttgaaagagagtttggctacaagattt |
52325572 |
T |
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| Q |
112 |
tatgagtttatgaagattgacaacttcaacatttgaaactgata |
155 |
Q |
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| T |
52325573 |
tatgagtttctgaagattgacaacttcaacattcgaaactgata |
52325616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 52322308 - 52322402
Alignment:
| Q |
49 |
gagaccatgattggagaaattcctgtttcccctgctttgaaagagagtttggctacaagattttatgagtttatgaagattgacaacttcaacat |
143 |
Q |
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| T |
52322308 |
gagactatgattggagaaatttctgtttcccctgctttgaaagagagtttggctacaagattttatgatcttatgaagattaacaatttcaacat |
52322402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 293 - 375
Target Start/End: Original strand, 52325773 - 52325854
Alignment:
| Q |
293 |
tttgtggacttggtacgtcattatttaaaatg-acgggttagttattcctggttgttttttcacgtgtttgtgcatcatttatg |
375 |
Q |
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| T |
52325773 |
tttgtggacttggtacgtcattatttgaaatgaatggcttagtta--cctggttgttttttaatctgtttgtgcatcatttatg |
52325854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 210 - 370
Target Start/End: Original strand, 9143310 - 9143467
Alignment:
| Q |
210 |
taatggacacatagtccatgtgaaatctataagtcatatagatttaatgttagtacttttttgaattaattctcccagcactttttgtggacttggtacg |
309 |
Q |
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| T |
9143310 |
taatggacacatagtccatgtgaaatctatagttcata--gatttaatgttagtacttttttgaattaattctcccagcac--tttgtggacttggtacg |
9143405 |
T |
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| Q |
310 |
tcattatttaaaatgacggg-ttagttattcctggttgttttttcacgtgtttgtgcatcat |
370 |
Q |
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| T |
9143406 |
tcattatttaaaatgacgggtttagttattcctggttgttttttcacatgtttgtgcatcat |
9143467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 9179536 - 9179674
Alignment:
| Q |
71 |
ctgtttcccctgctttgaaagagagtttggctacaagattttatgagtttatgaagattgacaacttcaacatttgaaactgataattataagcagtcgt |
170 |
Q |
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| T |
9179536 |
ctgtttcccctgctttgaaagagagtttggctacaagattttgtgagtttatgaagattgacaacttcaacatttgaaacttataa--ctaagcag-ctg |
9179632 |
T |
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| Q |
171 |
ctttgatcttgaaggcgaggtgatctttgatgcaagatataa |
212 |
Q |
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| T |
9179633 |
ctatgattttgaaggcgaggtgatctttgacgcaggatataa |
9179674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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