View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9389_low_20 (Length: 350)

Name: NF9389_low_20
Description: NF9389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9389_low_20
NF9389_low_20
[»] chr4 (11 HSPs)
chr4 (78-338)||(27451195-27451455)
chr4 (78-329)||(23907324-23907575)
chr4 (78-333)||(48623549-48623804)
chr4 (78-332)||(1778038-1778293)
chr4 (78-303)||(435267-435492)
chr4 (78-292)||(53703655-53703870)
chr4 (77-330)||(39707472-39707725)
chr4 (18-77)||(27446759-27446818)
chr4 (251-338)||(16001137-16001225)
chr4 (266-325)||(56224776-56224835)
chr4 (83-148)||(2296364-2296429)
[»] chr2 (10 HSPs)
chr2 (81-331)||(45368651-45368901)
chr2 (78-325)||(452638-452885)
chr2 (78-333)||(24584628-24584886)
chr2 (85-333)||(8179798-8180046)
chr2 (128-333)||(37281111-37281316)
chr2 (177-324)||(13148336-13148482)
chr2 (78-163)||(2609703-2609788)
chr2 (78-151)||(14769487-14769560)
chr2 (156-316)||(33251337-33251497)
chr2 (77-120)||(13148540-13148583)
[»] chr7 (12 HSPs)
chr7 (78-334)||(32629616-32629868)
chr7 (82-333)||(36650999-36651250)
chr7 (78-323)||(39907401-39907646)
chr7 (78-333)||(33350828-33351083)
chr7 (78-333)||(38896622-38896877)
chr7 (78-333)||(24178217-24178472)
chr7 (137-333)||(11592694-11592890)
chr7 (78-264)||(22346586-22346772)
chr7 (78-221)||(38606156-38606298)
chr7 (78-188)||(46356873-46356983)
chr7 (78-151)||(36870346-36870419)
chr7 (74-133)||(11593158-11593217)
[»] chr6 (8 HSPs)
chr6 (78-334)||(20428659-20428915)
chr6 (82-331)||(5260274-5260523)
chr6 (100-331)||(30669902-30670132)
chr6 (78-333)||(6082394-6082660)
chr6 (78-263)||(9705850-9706035)
chr6 (78-227)||(3629377-3629526)
chr6 (126-333)||(26290789-26290995)
chr6 (99-289)||(2681479-2681669)
[»] chr1 (10 HSPs)
chr1 (78-333)||(43241403-43241658)
chr1 (78-331)||(8670925-8671178)
chr1 (78-329)||(51441786-51442037)
chr1 (99-333)||(49348445-49348679)
chr1 (78-322)||(29173551-29173795)
chr1 (78-325)||(32405486-32405729)
chr1 (78-307)||(45833593-45833820)
chr1 (245-326)||(11681833-11681914)
chr1 (99-303)||(35829434-35829638)
chr1 (78-292)||(34828107-34828321)
[»] chr8 (7 HSPs)
chr8 (78-334)||(15216293-15216547)
chr8 (78-333)||(36544157-36544411)
chr8 (78-312)||(42855035-42855271)
chr8 (78-179)||(36566263-36566364)
chr8 (115-184)||(6184814-6184883)
chr8 (245-325)||(13588720-13588800)
chr8 (79-139)||(30579245-30579305)
[»] chr5 (9 HSPs)
chr5 (78-333)||(2076496-2076751)
chr5 (78-333)||(20317996-20318251)
chr5 (78-333)||(24177529-24177784)
chr5 (124-333)||(1288596-1288805)
chr5 (81-327)||(26970-27215)
chr5 (253-323)||(22832091-22832161)
chr5 (78-317)||(37123591-37123831)
chr5 (252-325)||(25937109-25937183)
chr5 (182-316)||(756080-756214)
[»] chr3 (7 HSPs)
chr3 (78-333)||(51448731-51448986)
chr3 (78-333)||(52137833-52138088)
chr3 (96-333)||(38849107-38849344)
chr3 (83-326)||(3368775-3369016)
chr3 (161-333)||(27916583-27916753)
chr3 (81-148)||(48220971-48221038)
chr3 (78-151)||(50630343-50630414)
[»] scaffold0113 (1 HSPs)
scaffold0113 (78-329)||(13280-13531)
[»] scaffold0018 (1 HSPs)
scaffold0018 (78-286)||(30520-30728)
[»] scaffold0045 (1 HSPs)
scaffold0045 (96-263)||(90130-90297)
[»] scaffold0171 (1 HSPs)
scaffold0171 (100-217)||(5568-5685)
[»] scaffold0220 (1 HSPs)
scaffold0220 (124-187)||(25277-25340)
[»] scaffold0140 (1 HSPs)
scaffold0140 (201-271)||(14931-15001)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 78 - 338
Target Start/End: Original strand, 27451195 - 27451455
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |||||    
T  27451195 cacaaaatctctctaagtactctatcctacgccttctccaaataagtgaaaactaattgcaagtcttttttatccgtccgatatcgctccatcatgcgtc 27451294  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
     ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  27451295 aaagtaagtagttcgcttccatagtcgacctccgaggaataaaaccaaataagttatccgtaacatgagtctcttttcttagtcttcgctcaattaccct 27451394  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgt 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27451395 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattatgt 27451455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 78 - 329
Target Start/End: Original strand, 23907324 - 23907575
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||    
T  23907324 cacaaaatctctcttggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgcgtc 23907423  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||   |||||  ||||  ||||||  |||||||||||||  || || |||||    
T  23907424 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattgattatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 23907523  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcg 329  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23907524 ttcccataactttatggtatgactcattagcttaattcccctataattcgcg 23907575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 78 - 333
Target Start/End: Original strand, 48623549 - 48623804
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| ||||||||||||||||| || | |||||||||| |||||||||    
T  48623549 cacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtcctatatcgctccatcacgcgtc 48623648  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||| ||||||| |  |||||||||||||||||||||||||||||||||||  ||||||| ||||  ||||||  |||||||||||||  || || |||||    
T  48623649 gaactaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtcttctttcttagtcttctttcgatcaccct 48623748  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48623749 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 48623804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 78 - 332
Target Start/End: Original strand, 1778038 - 1778293
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttcc-ccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgt 176  Q
    |||||||||||||| | ||||||||||||| ||||   |||||| | |||||||||| ||||||| ||||||||| || |||||||||||| |||| |||    
T  1778038 cacaaaatctctcttgatactctatcatacacctttttccaaatcaatgaaaactaagtgcaagttttttttatccgtccgatatcgctccatcacacgt 1778137  T
Q  177 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 276  Q
    |||||||||||| |  ||||||||||| ||||||||||||||||| |||||  ||||||  ||||  ||||||  |||||||||||||  || || ||||    
T  1778138 cgaagtaagtagattgcttccatagtcaacctcccaggcataaaatcaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccc 1778237  T
Q  277 tttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaa 332  Q
    |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  1778238 tttcccataattccatggtatgactcattagcttaattctcctataattcgcgcaa 1778293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 78 - 303
Target Start/End: Complemental strand, 435492 - 435267
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| |||||||||||||||| |||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||  |||||||||    
T  435492 cacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctctatcacgcgtc 435393  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  ||||||||||| |||||||||||||||||||||||  ||||||  ||||  ||| ||  |||||||||||||  || || |||||    
T  435392 gaagtaagtagattgcttccatagtcaacctcccaggcataaaaccaaattggttatccgtaactcgagcctcctttcttagtcttctttcgatcaccct 435293  T
Q  278 ttcccataacttcatggtatgactca 303  Q
    ||||||||||||||||||||||||||    
T  435292 ttcccataacttcatggtatgactca 435267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 78 - 292
Target Start/End: Complemental strand, 53703870 - 53703655
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt-atctgttcgatatcgctccctcacgcgt 176  Q
    |||||||||||||| ||||||| ||||||||||||  |||||| |||||||||||| |||||||| ||||| ||| || |||||||||||| ||||||||    
T  53703870 cacaaaatctctctcggtactcaatcatacgccttttccaaatcagtgaaaactaagtgcaagtcctttttcatccgtccgatatcgctccgtcacgcgt 53703771  T
Q  177 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 276  Q
    |||||||||||| |  ||||||||||||||||| ||| ||||||| ||| |  ||||||| ||||  ||||||  |||||||||||||  || || ||||    
T  53703770 cgaagtaagtagattgcttccatagtcgacctctcagacataaaatcaatttggttatctgtaacccgagtctcctttcttagtcttctttcgatcaccc 53703671  T
Q  277 tttcccataacttcat 292  Q
    ||||||||||||||||    
T  53703670 tttcccataacttcat 53703655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 77 - 330
Target Start/End: Complemental strand, 39707725 - 39707472
Alignment:
Q  77 tcacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgt 176  Q
    |||||||| ||||||||| ||||||||||||| |||| |||||| | |||||||||| ||||||||||||||||| ||  | ||||||||| |||| |||    
T  39707725 tcacaaaacctctctaggcactctatcatacgtcttctccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgttatcgctccatcacacgt 39707626  T
Q  177 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattacc- 275  Q
    |||||||||||  || ||| | ||||| | || ||||||||||||| ||||  |||||   |||   || | | ||||||||||||||| ||||| |||     
T  39707625 cgaagtaagtaaatcgctttcgtagtcaatct-ccaggcataaaacaaaattggttattcgtaaatcgactttcttttcttagtcttcgttcaatcacct 39707527  T
Q  276 ctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgc 330  Q
     ||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||    
T  39707526 ttttcctataacttcatggtatgactcattagtttaattcctctataattggcgc 39707472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 27446759 - 27446818
Alignment:
Q  18 catcaagaatcacaaggttttagagtagatgactgacttggagaaatgaaagagatttgt 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27446759 catcaagaatcacaaggttttagagtagatgactgacttggagaaatgaaagagatttgt 27446818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 338
Target Start/End: Original strand, 16001137 - 16001225
Alignment:
Q  251 ttttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcatt-agcttaattcccctataattcgcgcaatgatgt 338  Q
    ||||||||||||||| | ||| |||||||||||||||||||| |||||||||||| |  ||||||| |||||||||| |||||| ||||    
T  16001137 ttttcttagtcttcgttaaatcaccctttcccataacttcatagtatgactcattaattttaattctcctataattcacgcaattatgt 16001225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 56224835 - 56224776
Alignment:
Q  266 ctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt 325  Q
    |||||||||| ||||||| |||||||||  |||||||||||| |||||||| ||||||||    
T  56224835 ctcaattaccatttcccacaacttcatgacatgactcattagtttaattcctctataatt 56224776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 2296429 - 2296364
Alignment:
Q  83 aatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt 148  Q
    ||||||| |||| |||||||  ||| ||||| |||||| | |||||||||| ||||||||||||||    
T  2296429 aatctctttaggaactctattgtacaccttctccaaatcaatgaaaactaagtgcaagtctttttt 2296364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 81 - 331
Target Start/End: Original strand, 45368651 - 45368901
Alignment:
Q  81 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaa 180  Q
    ||||||||||||||||||||||||||||||||| | |||| | |||||||||| || ||||  |||||||| || |||||||||||| ||||||||||||    
T  45368651 aaaatctctctaggtactctatcatacgccttctcaaaatcaatgaaaactaagtgtaagttctttttatccgtccgatatcgctccatcacgcgtcgaa 45368750  T
Q  181 gtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttc 280  Q
    |||||||  || ||||||||||| |||||||||||||||| ||||||  ||||||  |||||||||||| ||||||||||||||| ||||||||||||||    
T  45368751 gtaagtatatcgcttccatagtcaacctcccaggcataaagccaaattggttatccgtaacatgagtctcttttcttagtcttcgttcaattaccctttc 45368850  T
Q  281 ccataacttcatggtatgactcattagcttaattcccctataattcgcgca 331  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45368851 ccataatttcatggtatgactcattagcttaattcccctataattcgcgca 45368901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 78 - 325
Target Start/End: Original strand, 452638 - 452885
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| ||||||||||| ||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  452638 cacaaaatctctctcggtactctatcgtacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 452737  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  452738 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 452837  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataatt 325  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  452838 ttctcgtaacttcatggtatgactcattagcttaattcccctataatt 452885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 78 - 333
Target Start/End: Original strand, 24584628 - 24584886
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| |  |||||||||||||||||| |||||| | |||||| ||  || |||||||||||||| || |||||||||||| |||||||||    
T  24584628 cacaaaatctctctggaaactctatcatacgccttctccaaatcaatgaaaattaggtgtaagtcttttttatccgtccgatatcgctccatcacgcgtc 24584727  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctc---aattac 274  Q
    ||||||||||| || |||||||| |||||||||||| ||||||||||||| |||||||| ||||  ||||||  |||||||||||| | ||   ||| ||    
T  24584728 gaagtaagtagatcgcttccatactcgacctcccagacataaaaccaaatcagttatctataactcgagtctcctttcttagtctttgttcaataatcac 24584827  T
Q  275 cctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24584828 cctttcccataacttcatggtatgactcattagcttaattcccctataattcgtgcaat 24584886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 85 - 333
Target Start/End: Complemental strand, 8180046 - 8179798
Alignment:
Q  85 tctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaa 184  Q
    ||||||| |||||||||||||||| |||  |||||| | ||||||| || ||||||||||||||||| || |||||||||||| ||||||||| ||||||    
T  8180046 tctctctcggtactctatcatacgtcttttccaaatcaatgaaaaccaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcaaagtaa 8179947  T
Q  185 gtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccat 284  Q
    |||| |  ||| |||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || ||||||||||||    
T  8179946 gtagattgctttcatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccctttcccat 8179847  T
Q  285 aacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8179846 aacttcatggtatgacttattagcttaattcccctataattcgcgcaat 8179798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 128 - 333
Target Start/End: Complemental strand, 37281316 - 37281111
Alignment:
Q  128 aactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 227  Q
    |||||||||||| ||||||||||  |   || |||||| | |||| |||| |||||||||| ||||||| ||||||||| || |||| ||||||||||||    
T  37281316 aactaattgcaaatcttttttattcgcatgacatcgcttcatcacacgtcaaagtaagtagatcacttctatagtcgacttctcaggtataaaaccaaat 37281217  T
Q  228 aagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcg 327  Q
      ||||||  |||| | ||| | ||| ||||||||||| ||||| ||  |||  |||||||||||||||||| ||||||| ||||||| |||||||||||    
T  37281216 tggttatcagtaacttaagtttgtttacttagtcttcgttcaatcactttttatcataacttcatggtatgattcattagtttaattctcctataattcg 37281117  T
Q  328 cgcaat 333  Q
    ||||||    
T  37281116 cgcaat 37281111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 177 - 324
Target Start/End: Complemental strand, 13148482 - 13148336
Alignment:
Q  177 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 276  Q
    |||||||||||| || |||||||||| |||  || |||||||||| |||||  ||||||  ||||  |||||| ||||||||||||||  ||||| ||||    
T  13148482 cgaagtaagtagatcgcttccatagttgaca-cctaggcataaaatcaaattggttatcgataactcgagtctcttttcttagtcttcattcaatcaccc 13148384  T
Q  277 tttcccataacttcatggtatgactcattagcttaattcccctataat 324  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||    
T  13148383 tttcccataacttcatggtaagactcattagtttaattcccctataat 13148336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 2609788 - 2609703
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcg 163  Q
    ||||||||||||||  | |||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || ||||||||    
T  2609788 cacaaaatctctctcagcactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcg 2609703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 14769560 - 14769487
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 151  Q
    |||||||||||||||| |||| ||||||||| |||| |||||| | ||||||| || |||||||||||||||||    
T  14769560 cacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatc 14769487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 316
Target Start/End: Complemental strand, 33251497 - 33251337
Alignment:
Q  156 cgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttc 255  Q
    |||||||||||| |||| ||||||||||| ||| | ||||||||||  |||||  | |||||||||||| ||  |||||   ||||  || ||  ||||     
T  33251497 cgatatcgctccatcacacgtcgaagtaattagataacttccatagaagacctttcgggcataaaaccagattggttataagtaactcgaatcacttttt 33251398  T
Q  256 ttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcc 316  Q
    |||||||||| ||||| ||| ||| ||||| |||||||| ||||||||| || ||||||||    
T  33251397 ttagtcttcgttcaatcaccattttccatagcttcatgggatgactcataagtttaattcc 33251337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 13148583 - 13148540
Alignment:
Q  77 tcacaaaatctctctaggtactctatcatacgccttccccaaat 120  Q
    |||||||||||||||||| ||||||||| || ||||||||||||    
T  13148583 tcacaaaatctctctaggcactctatcacacaccttccccaaat 13148540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 8e-83; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 78 - 334
Target Start/End: Complemental strand, 32629868 - 32629616
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || ||||||| |||| |||||||||    
T  32629868 cacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatctctccatcacgcgtc 32629769  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||    | || |||||||||||||||| ||||||||||| ||||||  ||||||  |||| ||||||| ||||||||||||||| |||||||||||    
T  32629768 gaagta----gatcgcttccatagtcgaccttccaggcataaagccaaattggttatccgtaacgtgagtctcttttcttagtcttcgttcaattaccct 32629673  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatg 334  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32629672 ttcccataacttcatggtatgactcattagcttaattcccctgtaattcgcgcaatg 32629616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 82 - 333
Target Start/End: Complemental strand, 36651250 - 36650999
Alignment:
Q  82 aaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaag 181  Q
    |||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||    
T  36651250 aaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaag 36651151  T
Q  182 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 281  Q
    ||||||| |  |||||||| |||||||||||| |||||||||||||  ||||||  ||||  ||||||  |||||||||||||  ||||| |||||||||    
T  36651150 taagtagattgcttccataatcgacctcccagacataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcaatcaccctttcc 36651051  T
Q  282 cataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  36651050 cataacttcatggtatgactcattagcttaattctcctataattcacgcaat 36650999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 78 - 323
Target Start/End: Original strand, 39907401 - 39907646
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  39907401 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtc 39907500  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  |||||| ||||||||||||||||||||||||||||  ||||||  ||||  | ||||  |||||||||||||  || || |||||    
T  39907501 gaagtaagtagattgcttccacagtcgacctcccaggcataaaaccaaattggttatccgtaactcgggtctcctttcttagtcttctttcgatcaccct 39907600  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataa 323  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  39907601 ttcccataacttcatggtatgactcattagcttaattccccaataa 39907646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 78 - 333
Target Start/End: Original strand, 33350828 - 33351083
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| |  ||||||||| ||||||||||||||||| || |||||||||||| ||||||||     
T  33350828 cacaaaatctctctcggtactctatcataccccttttccaaatcaaagaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtt 33350927  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  |||||||||||||||||||| ||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  |  || |||||    
T  33350928 gaagtaagtagattgcttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactagagtctcctttcttagtcttcttttgatcaccct 33351027  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33351028 ttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaat 33351083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 78 - 333
Target Start/End: Complemental strand, 38896877 - 38896622
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |   |||||    
T  38896877 cacaaaatctctctcggtactctatcatacaccttttccaaattaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccattgtgcgtc 38896778  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  |||||||||| |||||||||||||||||||| |||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  38896777 gaagtaagtagattgcttccatagttgacctcccaggcataaaaccgaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 38896678  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38896677 tttccataacttcatggtatgactcattagcttaattcccctataatttgcgcaat 38896622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 78 - 333
Target Start/End: Original strand, 24178217 - 24178472
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    ||||||||||||||||||||||| |||||| || || |||||| | ||||||||||||| ||  ||||| |||| || || ||||||||| |||||| ||    
T  24178217 cacaaaatctctctaggtactctgtcatacaccgtctccaaatcaatgaaaactaattgtaacccttttgtatccgtccggtatcgctccatcacgcatc 24178316  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    | || |||||| || ||||||||||||||||||  ||| |||||||||||  ||||||  |||| ||||||| ||||||||||||||| | ||| |||||    
T  24178317 gcagcaagtagatcgcttccatagtcgacctccagggcgtaaaaccaaatttgttatccgtaacttgagtctcttttcttagtcttcgttgaatcaccct 24178416  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  24178417 ttcccataacttcatggtatgactcattagctaaattcccctataattcacgcaat 24178472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 137 - 333
Target Start/End: Complemental strand, 11592890 - 11592694
Alignment:
Q  137 caagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatct 236  Q
    ||||||||||||||  || |||||||||||| ||||||||||||||||| || |  |||||||||||||||||| || |||||||||||||  ||||||     
T  11592890 caagtcttttttattcgtccgatatcgctccatcacgcgtcgaagtaagcagattgcttccatagtcgacctccaagccataaaaccaaattggttatcc 11592791  T
Q  237 ttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
     ||||  ||||||  |||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11592790 gtaactcgagtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 11592694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 78 - 264
Target Start/End: Complemental strand, 22346772 - 22346586
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| ||||| |||    
T  22346772 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgtgtc 22346673  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttc 264  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||   |||  ||||||  |||||||||||||    
T  22346672 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgaaactcgagtctcctttcttagtcttc 22346586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 38606298 - 38606156
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    ||||||||||||| |||||||| ||||||||||||| | |||| | |||||||||| || |||||||||||||| || |||||||||||| |||||||||    
T  38606298 cacaaaatctctccaggtactc-atcatacgccttctcaaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcacgcgtc 38606200  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaa 221  Q
    ||||||||||| || ||| ||||||||||||||||| |||||||    
T  38606199 gaagtaagtagatcgctttcatagtcgacctcccagacataaaa 38606156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 78 - 188
Target Start/End: Original strand, 46356873 - 46356983
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||  || |||||||||||| |||||||||    
T  46356873 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttattcgtccgatatcgctccatcacgcgtc 46356972  T
Q  178 gaagtaagtag 188  Q
    |||||||||||    
T  46356973 gaagtaagtag 46356983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 36870346 - 36870419
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 151  Q
    ||||||||||||||||| |||||||||||||||||| |||||| | |||||| ||| ||||||| |||||||||    
T  36870346 cacaaaatctctctaggcactctatcatacgccttctccaaatcaatgaaaattaagtgcaagtattttttatc 36870419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 11593217 - 11593158
Alignment:
Q  74 ttgtcacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaa 133  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||| | ||||||||||    
T  11593217 ttgtcacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaa 11593158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 78 - 334
Target Start/End: Original strand, 20428659 - 20428915
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    ||||||||||||||||||||||||||||||||||||  ||||| | |||||||||  || |||||||||||||| || |||||||||||| |||| ||||    
T  20428659 cacaaaatctctctaggtactctatcatacgccttctacaaatcaatgaaaactaggtgtaagtcttttttatccgtccgatatcgctccatcacacgtc 20428758  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
     |||||||||| || ||||||||||| |||||||| ||||||||||| ||  ||||| | |||| ||||||| | ||||||||||||| |||||||||||    
T  20428759 aaagtaagtagatcgcttccatagtcaacctcccaagcataaaaccatattggttatttgtaacgtgagtctctgttcttagtcttcgttcaattaccct 20428858  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatg 334  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20428859 ttcccataacttcatggtatgactcattagcttaattcccttataattcgcgcaatg 20428915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 82 - 331
Target Start/End: Original strand, 5260274 - 5260523
Alignment:
Q  82 aaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaag 181  Q
    |||||||||||||||||||||||||||||||| ||||||   |||||||||| || |||||||||||||| || |||||||||||| ||| ||||||||     
T  5260274 aaatctctctaggtactctatcatacgccttctccaaatcgatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcaggcgtcgaaa 5260373  T
Q  182 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 281  Q
    |||  || || |||||||| |||||||||||  |||||||||||||  ||||||  |||| ||||||| |||||| ||||||||||||||||||||||||    
T  5260374 taaagagatcgcttccataatcgacctcccatacataaaaccaaattggttatccgtaacgtgagtctcttttctaagtcttcgctcaattaccctttcc 5260473  T
Q  282 cataacttcatggtatgactcattagcttaattcccctataattcgcgca 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5260474 cataacttcatggtatgactcattagcttaattcccctataattcgcgca 5260523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 100 - 331
Target Start/End: Complemental strand, 30670132 - 30669902
Alignment:
Q  100 tatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccat 199  Q
    ||||| |||||||| |||||| | |||||||||| || ||||||||||| ||||| |||||||||||| |||| ||||||||||||||| |  |||||||    
T  30670132 tatcaaacgccttctccaaatcaatgaaaactaagtgtaagtcttttttctctgtccgatatcgctccatcacacgtcgaagtaagtagattgcttccat 30670033  T
Q  200 agtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatga 299  Q
    |||||||||||  |||||||||||||||  ||||||  |||| |||||||  |||||||||||||| ||||| | ||||| |||||||||||||||||||    
T  30670032 agtcgacctcct-ggcataaaaccaaattggttatccgtaacttgagtctcatttcttagtcttcgttcaatcatcctttgccataacttcatggtatga 30669934  T
Q  300 ctcattagcttaattcccctataattcgcgca 331  Q
    |||||||||||||||||||||||||| |||||    
T  30669933 ctcattagcttaattcccctataatttgcgca 30669902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 78 - 333
Target Start/End: Complemental strand, 6082660 - 6082394
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| |||||||| |||||||| || |||||||||| | ||||  |||    
T  6082660 cacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcctttttatccgtccgatatcgctgcatcacatgtc 6082561  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataa-----------gttatctttaacatgagtctattttcttagtcttcgc 266  Q
    ||||||||||| |  |||||||||||||||||||||||||||||  ||| ||           ||||||  ||||  ||||||  |||||||||||||      
T  6082560 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaaaaaaaaaaaaaaaaattggttatccgtaactcgagtctcctttcttagtcttctt 6082461  T
Q  267 tcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6082460 tcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 6082394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 78 - 263
Target Start/End: Complemental strand, 9706035 - 9705850
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || |||||||||||| || ||||||    
T  9706035 cacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcgcgcgtc 9705936  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtctt 263  Q
    ||||||||||| ||  ||||||||||||| |||||||||||||  ||| |  ||||||  |||| ||||||| |||||||||||||    
T  9705935 gaagtaagtagatcgtttccatagtcgacttcccaggcataaagtcaagttggttatccgtaacgtgagtctcttttcttagtctt 9705850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 227
Target Start/End: Complemental strand, 3629526 - 3629377
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||  |||||||| ||||||||||||||  ||||| | |||||||||| || ||||||||||| | ||| |||||||||||| |||  || |    
T  3629526 cacaaaatctccataggtactttatcatacgccttcttcaaatcaatgaaaactaagtgtaagtcttttttgtttgtccgatatcgctccatcatacgcc 3629427  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 227  Q
    ||||||||||| ||| |||||| |||||||||| | |||||||| |||||    
T  3629426 gaagtaagtagatcatttccattgtcgacctccaaagcataaaatcaaat 3629377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 333
Target Start/End: Complemental strand, 26290995 - 26290789
Alignment:
Q  126 aaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaa 225  Q
    |||||||| |||||||| ||||| | |||  ||||||||||| |||| | |||||| |||||| || |||||||| ||||||| |||  |||||||| ||    
T  26290995 aaaactaagtgcaagtcctttttttttgtctgatatcgctccatcacacatcgaagcaagtagatcgcttccata-tcgaccttccaaacataaaactaa 26290897  T
Q  226 ataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt 325  Q
    ||   || ||  |||| |||| || |||| |||||||||| ||||| || ||||    |||||| |||||||||||||| || ||||||||||||| |||    
T  26290896 attgattgtcaataacttgagactctttttttagtcttcgttcaatcactctttttattaactttatggtatgactcataaggttaattcccctatcatt 26290797  T
Q  326 cgcgcaat 333  Q
    ||| ||||    
T  26290796 cgcacaat 26290789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 289
Target Start/End: Original strand, 2681479 - 2681669
Alignment:
Q  99 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 198  Q
    ||||||||||||||| |||||| | |||||||||| ||||||| ||||||| | ||  ||||||| |    ||  ||||||| ||||||  || ||||||    
T  2681479 ctatcatacgccttctccaaatcaatgaaaactaagtgcaagtattttttacccgtctgatatcgttgtaccatacgtcgaactaagtaagtcgcttcca 2681578  T
Q  199 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataactt 289  Q
    ||||| || |  ||| |||||||||||||  ||||||  |  |  |||||| |||||||| |||||  ||||| |||||||||| ||||||    
T  2681579 tagtcaactttacagacataaaaccaaattggttatccattcctcgagtctcttttcttaatcttccttcaatcaccctttcccgtaactt 2681669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 78 - 333
Target Start/End: Original strand, 43241403 - 43241658
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| |||||||||||||||| |||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  43241403 cacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 43241502  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  |||| |||||||  |||||||||||||  || || |||||    
T  43241503 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtcttctttcgatcaccct 43241602  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  43241603 ttcccataacttcatggtatgactcattagcttaattcccttataattcacgcaat 43241658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 78 - 331
Target Start/End: Complemental strand, 8671178 - 8670925
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  8671178 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 8671079  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||   |||||  ||||  ||| ||  ||||||||| |||  || || |||||    
T  8671078 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattttttatccgtaactcgaggctcctttcttagttttctttccatcaccct 8670979  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgca 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8670978 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgca 8670925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 78 - 329
Target Start/End: Original strand, 51441786 - 51442037
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||  | ||||||||||||||| ||  |||||| | |||||||||| ||||||||||||||||| ||  |||||| |||| |||||||||    
T  51441786 cacaaaatctctcacgatactctatcatacgctttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgatatcactccatcacgcgtc 51441885  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    || |||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  51441886 gatgtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 51441985  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51441986 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcg 51442037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 99 - 333
Target Start/End: Original strand, 49348445 - 49348679
Alignment:
Q  99 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 198  Q
    |||||| |||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||||||| |  ||||||    
T  49348445 ctatcacacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagattgcttcca 49348544  T
Q  199 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatg 298  Q
    |||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||||||||| |||||||||||||    
T  49348545 tagtcgacctcccaggcataaaaccaaattggttatccataactcgagtcttctttcttagtcttctttcgatcaccctttcccatgacttcatggtatg 49348644  T
Q  299 actcattagcttaattcccctataattcgcgcaat 333  Q
    ||||||||||||||||| |||||||||||||||||    
T  49348645 actcattagcttaattctcctataattcgcgcaat 49348679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 78 - 322
Target Start/End: Original strand, 29173551 - 29173795
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    ||||||| |||||| || |||||||||||||||||| |||||| | | |||||||| ||||||||||||||||| ||  ||||||||||| |||| ||||    
T  29173551 cacaaaacctctctcggcactctatcatacgccttctccaaatcaataaaaactaagtgcaagtcttttttatccgtctgatatcgctccatcacacgtc 29173650  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||  |  |||||||||||||||||| |||||||||||||||| |||||||  ||||  |||||| |||||||||| |||| ||||| | |||    
T  29173651 gaagtaagtaaattgcttccatagtcgacctcctaggcataaaaccaaattagttatccgtaactcgagtctcttttcttagttttcgttcaatcatcct 29173750  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctata 322  Q
    ||| |||||||| || ||| |||||||||| ||||||||||||||    
T  29173751 ttcgcataacttgattgtacgactcattagtttaattcccctata 29173795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 325
Target Start/End: Original strand, 32405486 - 32405729
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    ||||||||||||||||  |||||||||||||| || || |||| | |||||||||| ||||  ||||||||||| ||  ||||||  ||| ||||  |||    
T  32405486 cacaaaatctctctagacactctatcatacgcttttcc-aaatcaatgaaaactaagtgcacatcttttttatcagtctgatatc--tccatcacatgtc 32405582  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  |||||||||||||||| | ||||||||| ||||||   ||||   ||||  || ||| |||||||||||| |||||||| ||| |    
T  32405583 gaagtaagtagattgcttccatagtcgaccttcaaggcataaatccaaattgattattggtaactcgaatct-ttttcttagtctccgctcaatcacctt 32405681  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataatt 325  Q
    ||||||||||||||||||||||||||| || |||||| ||||||||||    
T  32405682 ttcccataacttcatggtatgactcataaggttaatttccctataatt 32405729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 307
Target Start/End: Complemental strand, 45833820 - 45833593
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||| |||||||  |||||||| |||||||||  ||||| | |||||||||  | ||| |||||||||| ||| | ||||| |||| |||| ||||    
T  45833820 cacaaaatatctctagacactctatcgtacgccttcttcaaatcaatgaaaactatatacaaatcttttttatttgtccaatatcactccatcacacgtc 45833721  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  ||| |||||| ||  || ||  ||||||||||||| |||||||   ||| |||||||||||  |||||||||||||||| | | |    
T  45833720 gaagtaagtaggttgctttcatagttgatatctcatacataaaaccaaattagttatc--aaacttgagtctatttctttagtcttcgctcaatcatcat 45833623  T
Q  278 ttcccataacttcatggtatgactcattag 307  Q
    ||| ||||||||||||| ||||||| ||||    
T  45833622 ttctcataacttcatggcatgactcgttag 45833593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 11681914 - 11681833
Alignment:
Q  245 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattc 326  Q
    ||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||||||||||||||||||||    
T  11681914 agtctcttttcttagtcttcgctcaatcaccctttcccataatttgatggtatgactctttagcttaattcccctataattc 11681833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 99 - 303
Target Start/End: Original strand, 35829434 - 35829638
Alignment:
Q  99 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 198  Q
    |||| ||| |||||| |||||| | |||||||||| || |  |||||||||| ||| | |||| | ||| |||  |||| |||||||||| |||||||||    
T  35829434 ctattataagccttctccaaatcaatgaaaactaagtgtatatcttttttatttgtccaatattgttccatcatacgtctaagtaagtagatcacttcca 35829533  T
Q  199 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatg 298  Q
    |||||||||||||||||||||| | ||||  |||||   ||||  |||| | |||||||| ||| || ||||| || ||||||||||||||| |||||||    
T  35829534 tagtcgacctcccaggcataaatctaaattggttataagtaactcgagtattttttcttactctccgttcaatcactctttcccataacttcttggtatg 35829633  T
Q  299 actca 303  Q
    |||||    
T  35829634 actca 35829638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 292
Target Start/End: Original strand, 34828107 - 34828321
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||| |||  ||| |||||||| | |||  ||||| | |||||||||| ||| |||| ||||||| ||| ||||||| |||| ||   ||||    
T  34828107 cacaaaatctctttagacactatatcatacacattcttcaaatcaatgaaaactaagtgcgagtcatttttatatgtccgatatctctccatcgtacgtc 34828206  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    |||||| |||| || |||| ||| ||||||||||   ||||||| |||||    |||   ||||   ||||| ||| ||| |||||| |||||| | |||    
T  34828207 gaagtaggtagatcgcttctataatcgacctccctaacataaaatcaaattgaatattgataactcaagtctctttccttggtcttctctcaatcatcct 34828306  T
Q  278 ttcccataacttcat 292  Q
    |||||||||||||||    
T  34828307 ttcccataacttcat 34828321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 78 - 334
Target Start/End: Original strand, 15216293 - 15216547
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||| ||||||||||||||||||||||||   ||||| | |||||||||| || ||||||||||||||  |||||||||||  | ||| |||||    
T  15216293 cacaaaatctatctaggtactctatcatacgccttattcaaatcaatgaaaactaaatgtaagtcttttttatccattcgatatcgc--catcaagcgtc 15216390  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||   |||||  |||| ||||||| |||||||||||||||||||||||||||    
T  15216391 gaagtaagtagatcgctttcatagtcgacctcccaggcataaaaccaaattgattatccataacttgagtctcttttcttagtcttcgctcaattaccct 15216490  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatg 334  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15216491 ttcgcataacttcatggtatgactcattagcttaattcccctataattcgtgcaatg 15216547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 78 - 333
Target Start/End: Complemental strand, 36544411 - 36544157
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||| ||| |||||||||||||||||||| || |||| | |||||||||| ||||| ||||||||||| ||  ||||||||||  |||||||||    
T  36544411 cacaaaatctatctcggtactctatcatacgcctttcc-aaatcaatgaaaactaagtgcaaatcttttttatccgtcagatatcgctcaatcacgcgtc 36544313  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  |||| |||||||  |||||||||||||  || || |||||    
T  36544312 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtcttctttcgatcaccct 36544213  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36544212 ttcccataacttcatggtatgactcattagcttaattcccctatgattcgcgcaat 36544157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 78 - 312
Target Start/End: Original strand, 42855035 - 42855271
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt--atctgttcgatatcgctccctcacgcg 175  Q
    |||||||| |||||||| ||||||||||| |||||| |||||| | |||||||||| || |||||||||||  ||| || | |||||||||| |||||||    
T  42855035 cacaaaatatctctaggcactctatcatatgccttctccaaatcaatgaaaactaagtgtaagtcttttttttatccgtccaatatcgctccatcacgcg 42855134  T
Q  176 tcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattacc 275  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||||||  ||||||  ||||  |||||| ||||||||||||||||||||||  |    
T  42855135 tcgaagtaagtagatcgcttcaatagtcgacctcccaggcataaaaccaaattggttatccgtaacgcgagtctcttttcttagtcttcgctcaattttc 42855234  T
Q  276 ctttcccataacttcatggtatgactcattagcttaa 312  Q
    |||||||||||||||||||||||||||||||||||||    
T  42855235 ctttcccataacttcatggtatgactcattagcttaa 42855271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 36566263 - 36566364
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| | ||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  36566263 cacaaaatctctctcgatactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 36566362  T
Q  178 ga 179  Q
    ||    
T  36566363 ga 36566364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 6184883 - 6184814
Alignment:
Q  115 ccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaa 184  Q
    |||||| | |||||||||| || ||||||||||||||||| |||||||||||| |||| |||||||||||    
T  6184883 ccaaatcaatgaaaactaagtgtaagtcttttttatctgtccgatatcgctccatcacacgtcgaagtaa 6184814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 325
Target Start/End: Complemental strand, 13588800 - 13588720
Alignment:
Q  245 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt 325  Q
    ||||| |||||||||| |||||||||| | | |||||| |||||| ||||||||||||||||| ||||||| | |||||||    
T  13588800 agtctcttttcttagttttcgctcaatcatcatttcccttaactttatggtatgactcattagtttaattcacttataatt 13588720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 30579245 - 30579305
Alignment:
Q  79 acaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaa 139  Q
    |||||||||||||||| ||||||| || ||||||| |||||| | | |||||||| |||||    
T  30579245 acaaaatctctctaggcactctatgattcgccttctccaaatgaattaaaactaagtgcaa 30579305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 78 - 333
Target Start/End: Original strand, 2076496 - 2076751
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||| ||| ||||||||||||||||| || |||||||||||| || ||||||    
T  2076496 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaattaagtgcaagtcttttttatccgtccgatatcgctccatcccgcgtc 2076595  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  2076596 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 2076695  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2076696 ttcccataacttcatggtatgactcgttagcttaattcccctataattcgcgcaat 2076751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 78 - 333
Target Start/End: Complemental strand, 20318251 - 20317996
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||  ||||||||||||||||||||  |||||| | |||||||||| |||||||||| |||||| || |||||||||||| |||||||||    
T  20318251 cacaaaatctctcccggtactctatcatacgccttttccaaattaatgaaaactaagtgcaagtcttatttatccgtccgatatcgctccatcacgcgtc 20318152  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||| ||||  ||||||  |||||||||||||  || || |||||    
T  20318151 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtctcctttcttagtcttctttcgatcaccct 20318052  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  20318051 ttcccataacttcatggtatgactcattagcttaattccctaataatttgcgcaat 20317996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 78 - 333
Target Start/End: Complemental strand, 24177784 - 24177529
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| |||||||||||||| |||||   ||||| | |||||||||| ||||||||||||||||| || |||||||||||| ||| |||||    
T  24177784 cacaaaatctctctcggtactctatcatatgcctttttcaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcatgcgtc 24177685  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  ||||| |||||||||| ||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  24177684 gaagtaagtagattgcttccgtagtcgaccttccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 24177585  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24177584 ttcccataacttcatggtatgactcattagcttaattcccctataattcacgcaat 24177529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 124 - 333
Target Start/End: Original strand, 1288596 - 1288805
Alignment:
Q  124 tgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaacc 223  Q
    |||||||||| |||| |||||||||||| || |||||| ||||| |||||||||||||||||||| |  |||||| | |||||||||||| |||||||||    
T  1288596 tgaaaactaagtgcatgtcttttttatccgtccgatattgctccatcacgcgtcgaagtaagtagattgcttccacaatcgacctcccagccataaaacc 1288695  T
Q  224 aaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataa 323  Q
    ||||  ||||||  ||||  ||||||  |||||||||||||  || || ||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  1288696 aaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccctttcccatagcttcatggtatgactcattaacttaattcccctataa 1288795  T
Q  324 ttcgcgcaat 333  Q
    ||||| ||||    
T  1288796 ttcgcacaat 1288805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 81 - 327
Target Start/End: Complemental strand, 27215 - 26970
Alignment:
Q  81 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaa 180  Q
    ||||||||| |||| | |||||||| ||||||| |||||| | |||||||||| ||||||||||||||||| ||||||||||||| | |||| ||| |||    
T  27215 aaaatctctttaggaaatctatcattcgccttctccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgcttcatcacacgttgaa 27116  T
Q  181 gtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttc 280  Q
    |||||||| || ||||||||||||| ||  || |||||||||||||   ||||||  ||||   ||||| |||||||| | |||| ||||| ||||  |     
T  27115 gtaagtagatcgcttccatagtcgatct-tcaagcataaaaccaaaatggttatcagtaactcaagtcttttttcttaattttcgttcaatcacccgctt 27017  T
Q  281 ccataacttcatggtatgactcattagcttaattcccctataattcg 327  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||    
T  27016 ccatgacttcatggtatgactcattaatttaattcccctataattcg 26970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 22832091 - 22832161
Alignment:
Q  253 ttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataa 323  Q
    ||||||||||||  ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  22832091 ttcttagtcttcattcaatcactttttcccataacttcatggtatgactcattagcttaattcccctataa 22832161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 317
Target Start/End: Complemental strand, 37123831 - 37123591
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||| |||| ||||||||||||   ||| |||||| | |||||||||| ||||  |||||||||||  |||| ||||||| |||||  |||     
T  37123831 cacaaaatctctttaggaactctatcatacagtttctccaaatcaatgaaaactaagtgcacatcttttttatccattcgttatcgct-cctcatacgtt 37123733  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattac--c 275  Q
    | ||||||||| ||||||| || |||||| || || |||||||||||| |   ||| |  |||| ||||||| ||||||||||||||  ||||| ||       
T  37123732 gtagtaagtagatcacttctatggtcgacatctcaagcataaaaccaatttgattaacaataacttgagtctcttttcttagtcttcattcaatcacttt 37123633  T
Q  276 ctttcccataacttcatggtatgactcattagcttaattccc 317  Q
     ||| ||||||||||||||||||| |||| || |||| ||||    
T  37123632 tttttccataacttcatggtatgaatcataagtttaactccc 37123591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 25937183 - 25937109
Alignment:
Q  252 tttcttagtcttcgctcaattacccttt-cccataacttcatggtatgactcattagcttaattcccctataatt 325  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||||||| |||| || ||||||  |||||||||    
T  25937183 tttcgtagtcttcgctcaattaaccttttcccataacttcatggtatgaatcataagtttaattgtcctataatt 25937109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 316
Target Start/End: Original strand, 756080 - 756214
Alignment:
Q  182 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 281  Q
    ||||||| || ||||||| ||  ||||| |||||||||||  ||||   ||||| ||| | ||||||| ||||||| |||| |||||||| || ||||||    
T  756080 taagtagatcgcttccattgttaacctctcaggcataaaattaaattgattatcgttaccttgagtctcttttctttgtctccgctcaatcactctttcc 756179  T
Q  282 cataacttcatggtatgactcattagcttaattcc 316  Q
    ||||||||  ||||| ||||| | || ||||||||    
T  756180 cataacttgttggtacgactcttaagtttaattcc 756214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 78 - 333
Target Start/End: Original strand, 51448731 - 51448986
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  51448731 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 51448830  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||| ||| |  |||||||||||||||||||||| ||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  51448831 gaagtaaatagattgcttccatagtcgacctcccaggtataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 51448930  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51448931 ttcccataactttatggtatgactcattagcttaattcccctataattcgcgcaat 51448986  T

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Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 78 - 333
Target Start/End: Complemental strand, 52138088 - 52137833
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  52138088 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtc 52137989  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  ||| |||| ||||||||||||||||||||||||||  ||||||  ||||  || |||  ||||| |||||||  || || |||||    
T  52137988 gaagtaagtagattgctttcatattcgacctcccaggcataaaaccaaattggttatccgtaactcgaatctcctttctgagtcttctttcgatcaccct 52137889  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52137888 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcacaat 52137833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 96 - 333
Target Start/End: Complemental strand, 38849344 - 38849107
Alignment:
Q  96 actctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcactt 195  Q
    |||||||| ||||||||| |||||| | |||||||||| || |||| ||||||||| || ||| ||| |||| ||| ||||| ||||||||||  | |||    
T  38849344 actctatcttacgccttctccaaatcaatgaaaactaagtgtaagtgttttttatccgtccgacatcactccgtcaagcgtcaaagtaagtagaccgctt 38849245  T
Q  196 ccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggt 295  Q
    ||||||||||||||||||||||||||  |||| |||||||| ||||  |||||| ||||||||| ||||| ||||| || ||||||||||||||||||||    
T  38849244 ccatagtcgacctcccaggcataaaagaaaattagttatctgtaacccgagtctcttttcttagccttcgttcaatcactctttcccataacttcatggt 38849145  T
Q  296 atgactcattagcttaattcccctataattcgcgcaat 333  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  38849144 atgactcattagtttaattcccttataattcgcgcaat 38849107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 326
Target Start/End: Complemental strand, 3369016 - 3368775
Alignment:
Q  83 aatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt-atctgttcgatatcgctccctcacgcgtcgaag 181  Q
    |||||||||||| |||||||||||| |||   |||||| |  ||||||||| |||||||||||||| ||| ||  ||||| ||||| ||| |||||||||    
T  3369016 aatctctctaggcactctatcatacacct---ccaaatcaaagaaaactaagtgcaagtctttttttatccgtctgatattgctccatcatgcgtcgaag 3368920  T
Q  182 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 281  Q
    || |||| | |||| ||||||||| ||| || ||| | ||| |||| | ||||   ||||  |||||| ||||||||||||||| ||||| ||  |||||    
T  3368919 taggtagataactttcatagtcgatctcacaagcaaataactaaattaattataagtaactcgagtctcttttcttagtcttcgttcaatcacattttcc 3368820  T
Q  282 cataacttcatggtatgactcattagcttaattcccctataattc 326  Q
    |||||||||||||||||| | || || |||||||  |||||||||    
T  3368819 cataacttcatggtatgaattataagtttaattcttctataattc 3368775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 333
Target Start/End: Complemental strand, 27916753 - 27916583
Alignment:
Q  161 tcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagt 260  Q
    ||||||| |||| ||| ||||||||||  |||| ||||| ||||||||   || |||||||||||||  ||||||  |||| || |||| |||||||| |    
T  27916753 tcgctccatcacacgtggaagtaagtaaatcacatccatggtcgacctt--agacataaaaccaaattggttatcactaacttgggtctcttttcttatt 27916656  T
Q  261 cttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 333  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||| |  |||  ||||||||||||| ||||||    
T  27916655 cttcgttcaatcaccctttctcataacttcatggtatgactcatcaatttatatcccctataattcacgcaat 27916583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 48221038 - 48220971
Alignment:
Q  81 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt 148  Q
    ||||| |||||||| | |||||||||||  ||| |||||| | |||||||||| ||||||||||||||    
T  48221038 aaaatatctctaggcaatctatcatacgttttctccaaatcaatgaaaactaagtgcaagtctttttt 48220971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 50630343 - 50630414
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 151  Q
    |||||||| |||| ||| |||||  |||| |||||| |||||| | |||||||||| |||||||||||||||||    
T  50630343 cacaaaatatctcgaggcactct--catatgccttctccaaatcaatgaaaactaagtgcaagtcttttttatc 50630414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 78 - 329
Target Start/End: Original strand, 13280 - 13531
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    ||||||||||||||||| |||||||||||||||||| |||||| | |||||||||| || |||||||| ||||| ||   ||||||||||  ||||||||    
T  13280 cacaaaatctctctaggaactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtctttattatccgtcatatatcgctccaccacgcgtc 13379  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| ||  ||||||||||||||||||| ||||||||||||||  ||||||  ||||  ||||||  | |||||||||||| ||||| ||| |    
T  13380 gaagtaagtagatcgtttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactggagtcttctctcttagtcttcgttcaatcaccat 13479  T
Q  278 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13480 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcg 13531  T

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Target: scaffold0018 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 78 - 286
Target Start/End: Complemental strand, 30728 - 30520
Alignment:
Q  78 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 177  Q
    |||||||||||||| ||||||||||||||||||||  |||| | | |||||||||| ||||||||||||||||| ||  ||||||||| | ||||||||     
T  30728 cacaaaatctctctcggtactctatcatacgccttttccaattcaatgaaaactaagtgcaagtcttttttatccgtctgatatcgcttcatcacgcgtt 30629  T
Q  178 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 277  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  ||||| |||||    
T  30628 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcaatcaccct 30529  T
Q  278 ttcccataa 286  Q
    |||||||||    
T  30528 ttcccataa 30520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 96 - 263
Target Start/End: Original strand, 90130 - 90297
Alignment:
Q  96 actctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcactt 195  Q
    |||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || ||||| |||||   |||  |||||| ||||||| ||||||    
T  90130 actctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgataacgctcgaccacatgtcgaattaagtagatcactt 90229  T
Q  196 ccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtctt 263  Q
    ||||||| |||||||| ||||||||| |||||  ||||||  ||||  |||||| |||||||||||||    
T  90230 ccatagttgacctccctggcataaaatcaaattggttatccgtaactcgagtctcttttcttagtctt 90297  T

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Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 5685 - 5568
Alignment:
Q  100 tatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccat 199  Q
    |||||||||||||| |||||||| |||||||||| ||| | | ||||||||| ||   |||||||||| |||| |||  ||||||| |  || |||| ||    
T  5685 tatcatacgccttctccaaataaatgaaaactaagtgcgattgttttttatcagtcaaatatcgctccatcacacgtttaagtaaggaaatcgcttcgat 5586  T
Q  200 agtcgacctcccaggcat 217  Q
    | ||||||||||| ||||    
T  5585 attcgacctcccatgcat 5568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 25277 - 25340
Alignment:
Q  124 tgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagta 187  Q
    |||||||||  ||||||||||||||||||||| |||||| |||  |||  ||||||||||||||    
T  25277 tgaaaactaggtgcaagtcttttttatctgtttgatatcactctatcaaacgtcgaagtaagta 25340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 14931 - 15001
Alignment:
Q  201 gtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaat 271  Q
    |||||||||| || ||||||||||||| | ||||   ||| |||||||| |||| ||||||||||||||||    
T  14931 gtcgacctcctagacataaaaccaaattaattattgataatatgagtctcttttattagtcttcgctcaat 15001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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